ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...gtaagactctgatgcgtatgcgatggtttgtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA

Basic information

species	Oryza sativa
transcript	LOC_Os08g41810.1
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G112077_T01 (Zea mays), 3'ss of exon 1

gtaagactctgatgcgtatgcgatggtttgtt--tcttggtt--cttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
   | ||| ||||||   | |  || || |||  | | |  |  | | |      ||  | | | | || |  |   | |   |  ||   ||  |  |||||||||| |||||||||| | || |  |||| ||||||| || ||| |||||| ||||| |||||||| ||| |||||||||||| |||| |||||  |||| 
--catactgtgatgca-gttcagtgattagttgatatcgaatggcatatctaagattggcttatctttcca-ttatcttttctaaactggtatgttcactgcagAACATAAGGGAGACAACTTTTGTGCTTCACAAGCTGTCTATGGCCAAGGCTAAGCGATACCTTGATGATATTATTGCTCACAGGCAGTCAATTGTCTTCC

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G702426_T01 (Zea mays), 3'ss of exon 3

gtaagactctgatgcgt-atgcgatggttt--gtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaa-atgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
   | |||| | |  || ||  | || | |  | ||   | |      | |    ||   | | | ||| | |   | | |  |  |||  | |||| ||||||||||||||||||||||| || || ||||||||||||||||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| 
---atactcagttcagtgattagttgatatcagatttcagatggcgactctgagattgattatctttct-gttatctcttattaaactcgtaaaattactgcagAACACAAGGGAGACAGCTTTTGCGCTTCGCAAGCTGCCTTTGACCAAGGCTAAGCGATACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCC

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G148744_T01 (Zea mays), 3'ss of exon 3

gtaagactctgat-gcgtatgcgatggtttgtt--tcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctcta--ataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
     | |||| |   | || |  || || |||  | |  | |  |||        ||    | ||| |   | |      | |   ||   ||||   ||||||||||||||||||||||| || || ||||||||| || |||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| 
-----attctgcttaggcatactgtgattagttgatatcagatgatgtctctgagattgacatatctttccattatctcttattaaactggtataaccactgcagAACACAAGGGAGACAGCCTTTGCGCTTCGCAAGTTGTCTTTGACCAAGGCTAAGCGATACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCC

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G10910.2 (Glycine max), 3'ss of exon 3

--gtaagactctgatgcgtatgcgatggtttgtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
   |    |  ||||||     | ||  | ||    ||   | || ||    | |  | | || ||  |  | |        |  |  |||      | |||||||||||||| || || || ||  |  | ||| |||| ||||||||||| ||  ||||| | || |||||| |||| ||||||||||||||||| ||||
tgctgtttcattgatgctggaacaatactatggggttta--ttttattgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G67430.2 (Arabidopsis thaliana), 3'ss of exon 3

gtaagactctgatgcgt-atgcgatg-gtttgtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataat-tgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
 |     | || |  || || | |     ||  | ||  ||| |||  ||   ||     |||  | | |     |||    |  ||  ||  | ||   ||||| || ||||| ||||||  |||  |  | ||||| || ||| ||||||| ||| |||||||||||||||| || ||||||||||| |||||||||||||
ttgttgttttggttagtgattccacataattaatactgtgtttttga-atttgttggttggttcttattgtgttttgttt--tcttcggattgtgtgaaacagAATACTAGGGAAACAGCGCACGCAATCAGGAAGCTACCATTGATCAAGGCGAAGAGGTACCTTGAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCA

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S22_76V6.1 (Physcomitrella patens), 3'ss of exon 3

-----------------------------------gtaagactctgatg----cgtatgcgatggtttgtttcttggt--------tcttgttatcctttttcctgtttctctagctgaatgtcaa--atgctctaataattgctgca-----gAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA
                                   ||  ||| || | |    | || | | | ||   ||   |||         || ||| |   |  | | | || | |   |  ||    |   ||| |  | |  || |||||     |||||| |||||  |||||   ||| |     |  ||   |||| |||||| |||||||||||||| |||||   ||||||||||||||| || |||||| 
gtactgatcatcactgaagtttttgttgtcgaagtgtttgaccctcaagtttccctacgagctagtagcttcagtggacgtgtcaatcatgtaaaattcgtacatattacacagacaaaaaagaattcatgttggatttctttctgcattgcagAACACTAGGGAAGCAGCGCAAGCTATCAAACATATGGAGTTGGCCAAGGCTAAGCGGTACCTTGAAGATGTGTGTGCTCACAAGCAGGCTATCCCCTTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|88569588|gb|CI660763.1|CI660763

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88736061|gb|CI759569.1|CI759569

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88329008|gb|CI658658.1|CI658658

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCATTTCAAG                         AACACAAGGGAGACAGGGTTCGCTCTTCGCAAGCTGCCTTGGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|3761527|gb|C98775.1|C98775

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88339235|gb|CI633806.1|CI633806

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88742236|gb|CI765744.1|CI765744

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88569569|gb|CI660744.1|CI660744

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88590119|gb|CI708948.1|CI708948

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88693808|gb|CI735385.1|CI735385

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88349920|gb|CI634455.1|CI634455

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88314950|gb|CI610009.1|CI610009

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88346135|gb|CI634008.1|CI634008

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88335987|gb|CI645588.1|CI645588

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88348584|gb|CI634179.1|CI634179

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88732230|gb|CI757078.1|CI757078

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTNCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|38565668|gb|CK085121.1|CK085121

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|3767152|gb|AU031262.1|AU031262

EST:     CGGCCAAGGCCATNGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGNGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88576077|gb|CI670222.1|CI670222

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88591466|gb|CI707502.1|CI707502

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88357622|gb|CI623676.1|CI623676

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACAAAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88290637|gb|CI667010.1|CI667010

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88308770|gb|CI653657.1|CI653657

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88731799|gb|CI753519.1|CI753519

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|86899886|gb|CI300046.1|CI300046

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|27548383|gb|CA766455.2|CA766455

EST:     GGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGGCAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: GGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88362003|gb|CI607003.1|CI607003

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88368933|gb|CI636710.1|CI636710

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88309084|gb|CI654703.1|CI654703

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|426713|gb|D22783.1|D22783

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88337583|gb|CI630880.1|CI630880

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTCCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88327780|gb|CI657824.1|CI657824

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88586833|gb|CI704553.1|CI704553

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|55410152|gb|CV722528.1|CV722528

EST:     TCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: TCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88342189|gb|CI658844.1|CI658844

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88296258|gb|CI667648.1|CI667648

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88721296|gb|CI744595.1|CI744595

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88325699|gb|CI648142.1|CI648142

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88392867|gb|CI624098.1|CI624098

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88742322|gb|CI765830.1|CI765830

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|11173119|gb|AU164622.1|AU164622

EST:     CGGGCCAAAGGCCATGGGNAAGGGATCTCAGGGGTCCACTTCAAG                         AACNCAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: C-GGCC-AAGGCCATGGG-GAGGGATCTCA-GGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88575603|gb|CI669748.1|CI669748

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88340872|gb|CI637032.1|CI637032

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88570837|gb|CI662210.1|CI662210

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88692632|gb|CI736207.1|CI736207

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88306868|gb|CI672036.1|CI672036

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|568190|gb|D39025.1|D39025

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88349906|gb|CI634441.1|CI634441

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|427670|gb|D23804.1|D23804

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88332741|gb|CI660259.1|CI660259

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|33670174|gb|CF298413.1|CF298413

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

EST: gi|88331769|gb|CI640800.1|CI640800

EST:     CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG                         AACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA
genomic: CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 94

CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAGgtgcgtttcg ... attgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA

                                     ctctaat  putative branch site (score: 94)
                                      tctaataatt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactctgatgcgtatgcgatggtttgtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - ctgatgc
- - - - - - - - - tgcgatg
- - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgc