1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agatgaaaccatacatataaaagacatacattgtagcagtaatgtaaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
species | Oryza sativa |
transcript | LOC_Os08g41460.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29662553|gb|CB658828.1|CB658828
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|58595312|gb|CF993620.1|CF993620
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|58681495|gb|CK070182.1|CK070182
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29684941|gb|CB681216.1|CB681216
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGATATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29663222|gb|CB659497.1|CB659497
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29615644|gb|CB620656.1|CB620656
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|33800060|gb|CF325896.1|CF325896
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29683115|gb|CB679390.1|CB679390
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29684942|gb|CB681217.1|CB681217
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|109974622|gb|DT807009.1|DT807009
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTEST: gi|163920678|gb|EG710011.1|EG710011
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|33801003|gb|CF326375.1|CF326375
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|38473511|gb|CF957643.1|CF957643
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|33682742|gb|CF310981.1|CF310981
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29662552|gb|CB658827.1|CB658827
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
aaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
aacttac putative branch site (score: 2)
tctgttattatttttt putative PPT
tcaatctgttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaaaccatacatataaaagacatacattgtagcagtaatgtaaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG