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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgtgattgccaccgatgcgcgctcatgtggttgattagttccgctcatcgtgatttttgcatttacctagtcgtgctgttgcctcctctccagaaggatatgcagAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTT

Basic information

species Oryza sativa
transcript LOC_Os08g41010.7
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41010.7 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G134770_T03 (Zea mays), 3'ss of exon 3
--------------------------gtacatgtgattgcc--accgatgcgcgctca-tgtggttg--attagttccgctcatcg--tgatt-tttgcatttacctagtcgtgctgttgcctcctctccagaaggatatgcagAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTT---
                           | ||  |  ||| |   | | |  ||||  | |||   ||   ||| ||| |||  | |  ||    ||||||||||||| ||  |||| |||| | || | |||||||  |||||||               | ||||| |  |  ||||  ||||| || |||||||||||||||||||| || || |||||||| || |||||||||||||| |   
gtacatgatggtttcacctcgctttactgcagattgttggcttgctgctttgcgcatagtgtacctgtggttacttctgcttgttgcttgcccgtttgcatttacctggtgctgctattgctttctgttcagAAGGCCATGCAGA---------------CCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCCCAGGGACGCCACCGTCGATGTACCTTGGTGGTGGTGCTCCCCCATATG

upper sequence: LOC_Os08g41010.7 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G134770_T04 (Zea mays), 3'ss of exon 3
--------------------------gtacatgtgattgcc--accgatgcgcgctca-tgtggttg--attagttccgctcatcg--tgatt-tttgcatttacctagtcgtgctgttgcctcctctccagaaggatatgcagAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTT------
                           | ||  |  ||| |   | | |  ||||  | |||   ||   ||| ||| |||  | |  ||    ||||||||||||| ||  |||| |||| | || | |||||||  |||||||               | ||||| |  |  ||||  ||||| || |||||||||||||||||||| || || |||||||| || |||||||||||||| |      
gtacatgatggtttcacctcgctttactgcagattgttggcttgctgctttgcgcatagtgtacctgtggttacttctgcttgttgcttgcccgtttgcatttacctggtgctgctattgctttctgttcagaagGCCATGCAGA---------------CCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCCCAGGGACGCCACCGTCGATGTACCTTGGTGGTGGTGCTCCCCCATATGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673635|gb|CK062321.1|CK062321
EST:     CCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATACGGATATGCAG                 
genomic: CCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGAC--T----ATA--C-Ggtacatgtga ... gg






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttttgcatttacctagtcgtgctgttgcctcctctccagaaggatatgcagAAACCTATGCAGACACCGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCTCGGGGGTGGTGCTCCCCCTT
          attta  TA-rich tract