1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttccaggaaatttgagacaattgctcactgcacaaaagcattgcctagattattgcattttacaactgaaaactgaaggaaacttctttcttctctacagGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATC
species | Oryza sativa |
transcript | LOC_Os08g37480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAG GCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAG
genomic: GGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGgtaaattcta ... ttctctacagGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAG
tagattattgcattttacaactgaaaactgaaggaaacttctttcttctctacagGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATC
cttctttcttctctac CT-rich tract
attttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaggaaatttgagacaattgctcactgcacaaaagcattgcctagattattgcattttacaactgaaaactgaaggaaacttctttcttctctacagGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - -gagacaa
- - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - caaaagc
- - - - - - - - - - - - - - - - - - - - -tgcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaggaaa