1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagccataggctcccctctgtatatcattttgtttctgtacatgtaagctgaatgttactaaaatgttttagacaaattctgtactgaaaattgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTTGGCAGCTAAAGTTCCAAATGTACAAAATTCTGCTTGCGATTACCAAGA
species | Oryza sativa |
transcript | LOC_Os08g32850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTEST: gi|29674091|gb|CB670366.1|CB670366
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTEST: gi|29640074|gb|CB645083.1|CB645083
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTEST: gi|29681516|gb|CB677791.1|CB677791
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: AGCATCAGTGCATTGTAAGATATCACGAGTCTCTGATCACTTTGCACAAG ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
aagctgaatgttactaaaatgttttagacaaattctgtactgaaaattgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTTGGCAGCTAAAGTTCCAAATGTACAAAATTCTGCTTGCGATTACCAAGA
ttactaaaatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagccataggctcccctctgtatatcattttgtttctgtacatgtaagctgaatgttactaaaatgttttagacaaattctgtactgaaaattgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACTTGGCAGCTAAAGTTCCAAATGTACAAAATTCTGCTTGCGATTACCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT