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...ctttcagtcaaaagaaatacaaggaacatcaatcttcttctatttatgttggtatactgtgttaggaaacctttgtaatattttttggttgacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTTCACTGAGGGAAATGAGAGGGGTGTTTGGTTGAATGACTTCCAGTATGCT
species | Oryza sativa |
transcript | LOC_Os08g14570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAAC GTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTTEST: gi|88737205|gb|CI760713.1|CI760713
genomic: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAACgtaagacact ... gacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTT
EST: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAAC GTACGGAGATGGTGAACCCGACTGACAAEST: gi|88312458|gb|CI584981.1|CI584981
genomic: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAACgtaagacact ... gacatttcagGTACGGAGATGGTGAACC-GACTGACAA
EST: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAAC GTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTTEST: gi|29616164|gb|CB621176.1|CB621176
genomic: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAACgtaagacact ... gacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTT
EST: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAAC GTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTT
genomic: TACGAGGAGAGATTGAAGAAGGAGAAGATATCGTTGTTCTTCGTTGCAACgtaagacact ... gacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTT
atgttggtatactgtgttaggaaacctttgtaatattttttggttgacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTTCACTGAGGGAAATGAGAGGGGTGTTTGGTTGAATGACTTCCAGTATGCT
ggttgac putative branch site (score: 85)
tttgtaatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcagtcaaaagaaatacaaggaacatcaatcttcttctatttatgttggtatactgtgttaggaaacctttgtaatattttttggttgacatttcagGTACGGAGATGGTGAACCGACTGACAATGCTGCTAGGTTCTATAAATGGTTCACTGAGGGAAATGAGAGGGGTGTTTGGTTGAATGACTTCCAGTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - aaagaaa
- - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - tatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtta