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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggaaatataacatgttttttgggtgttaagtgagccagtcttaatgtaaaatcagccatgtgcttgtttacccaaacctttttcatttctgcacattagGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCG

Basic information

species Oryza sativa
transcript LOC_Os08g14460.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g14460.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G147500_T05 (Zea mays), 3'ss of exon 3
cggaaatataacatgttttttgggtgttaagtgagccagtcttaatgtaaaatcagccatgtgcttgttt--------acccaaacctttttcatttctgcacattagGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCG
        |    ||   ||||||  | ||   |  | |      |  |   ||  |||||||||| |||        |||  | | |||||   |||||      |||| |||||||| ||||| || |||||||||||||| || || |||||||| ||| | || ||||||||| |||||||||| ||||| | ||| |||||
--------tcttttgaaatttggggatcaatatatgcggagggctttaaggttcctccatgtgctttttttaaaacttaccacaccttttttgggttctgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaaatcagccatgtgcttgtttacccaaacctttttcatttctgcacattagGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCG
                                cctttttcatttctgc  CT-rich tract
                                  tttttcattt  TA-rich tract