Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG

Basic information

species Oryza sativa
transcript LOC_Os08g13690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
------gtgagaaac-tataccgctacggcttaaaat-tgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
       | ||   | ||| ||  ||      | |   ||  ||||| ||| || ||  |      |  || |      |  ||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 3
------gtgagaaac-tataccgctacggcttaaaat-tgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG--------------
       | ||   | ||| ||  ||      | |   ||  |||||  || || ||  |      |  || |      | |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||              
gtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAGATGTGTTCACTAAT

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
-------gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
       |  ||    ||| ||  ||     || |    | | | |    ||     ||   | |||  |      ||   ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaacta--cagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G344279_T02 (Zea mays), 3'ss of exon 4
------gtgagaaac-tataccgctacggcttaaaat-tgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
       | ||   | ||| ||  ||      | |   ||  |||||  || || ||  |      |  || |      | |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
gtgagtctcaggttcatatgccagtattatacagaggatgaatttgtaggcttatgctgttttccatttctgttgaaactatagTATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA15G18170.2 (Glycine max), 3'ss of exon 3
------------------------------------gtgagaaactataccgctacggcttaaaattgtctttgtttgcataa--gcattgacagttcgctatgcttt----atgt-agTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
                                     | | | |  ||  |   |       | ||||||||| |    ||    |  ||    | |      | ||     | || ||||||||||||||| | ||||| || ||||||||  ||||||||||||| ||||| |||
gtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 3
gtgagaaact-ataccgctacggcttaaaattgtctt----tgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
||  |  | | | |  | |    |   |||||  |||     || || |  ||  ||||   |    ||||  |  | ||| |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| |||
gtatgtcatttacaatgttctttcaataaattagcttgttgcgtgtgaaggagtgttgattata-attatgaatcttttagGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S7_369V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatg---tagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG------------------------------------------
                       |    || |||    |      || |  | |  | | | |  |  ||   ||||   |   | | |||  ||   ||||||||||| |||||||||||||  |||||||||| |||| ||  || || ||||||||                                          
gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtggaatgt-tgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 2
gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
|||||    | | |     ||  || ||   |||| |     |   || ||| |   || | |    || ||  |||||||| | |||||| ||||||||| ||||||||||||||||||| ||  || | |||
gtgagtggtttttctttctcgattttaa---gtctgtacaaacg-gagtatt-atcttttgtt----ttcatccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

upper sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 2
gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
||| |  | | | ||    ||  || ||   |||  |     |   || ||  | | || | |    || ||  |||||||| | |||||| ||||||||| ||||||||||||||||||| ||  || | |||
gtgggtgaattttccttctcgattttaa---gtccgtacaaacg-gagtat--aaattttgtt----ttcatccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487946|gb|FG943621.1|FG943621
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88763910|gb|CI773326.1|CI773326
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTT
EST: gi|88729241|gb|CI752751.1|CI752751
EST:     TTCTACGTAAGCCCTGAGGCAAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGAACAGGAACATCTTGCAGCTCCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33662258|gb|CF293225.1|CF293225
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88730493|gb|CI754106.1|CI754106
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGC
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGC
EST: gi|218500250|gb|FG946063.1|FG946063
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGCTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33656769|gb|CF279383.1|CF279383
EST:     TTCTACGTCAGCCCTGGGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88762137|gb|CI771693.1|CI771693
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCACCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|11172840|gb|AU164483.1|AU164483
EST:     CTACGTCAAG-CCTGAGGCCAAACTTCTGTTTGTGGTCCGGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: CTACGTC-AGCCCTGAGGCCAAACTTCTGTTTGTGGTCC-GCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33686974|gb|CF315213.1|CF315213
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218500236|gb|FG945125.1|FG945125
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88344209|gb|CI655603.1|CI655603
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|29617930|gb|CB622942.1|CB622942
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|569496|gb|D40345.1|D40345
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|11026050|gb|AU162651.1|AU162651
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33380976|gb|CF196319.1|CF196319
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33688839|gb|CF317078.1|CF317078
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33683489|gb|CF311728.1|CF311728
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|38476312|gb|CF960445.1|CF960445
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58681140|gb|CK069827.1|CK069827
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58588495|gb|CF986803.1|CF986803
EST:     TTCTACGTCAGCCCTGAGGCCAAACGTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|86499359|gb|CI141992.1|CI141992
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88363002|gb|CI616159.1|CI616159
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33694126|gb|CF322365.1|CF322365
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88421570|gb|CI618694.1|CI618694
EST:     TTCTACGTCAGCCCTGAGGCCACACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCCTTCTGGGGT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGC-TTCTGCGGT
EST: gi|218479663|gb|FG949104.1|FG949104
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33805769|gb|CF328764.1|CF328764
EST:     TTCTACGTCAGCCCTGAGGCCGAACTTCTGTTTGTAGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58683169|gb|CK071856.1|CK071856
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88764957|gb|CI774075.1|CI774075
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGG
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGG
EST: gi|88377207|gb|CI600362.1|CI600362
EST:     CTACGTCAGCCCTGAGGCCAAACTTCTTGTTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: CTACGTCAGCCCTGAGGCCAAACTTCT-GTTT-GTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|3766846|gb|AU030956.1|AU030956
EST:     CTTCTGTTTGTGGCCCNCATCCGTGG                         TATCAATGCCATGCACCCCAAGNCCAGGAAGATC-TNCAGCTTCTGCGGTT
genomic: CTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88762250|gb|CI771806.1|CI771806
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|87026596|gb|CI252550.1|CI252550
EST:     GGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: GGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88421996|gb|CI611616.1|CI611616
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88696162|gb|CI739737.1|CI739737
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCT
EST: gi|33655322|gb|CF277936.1|CF277936
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58604687|gb|CK015215.1|CK015215
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58667845|gb|CK056531.1|CK056531
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88729387|gb|CI752897.1|CI752897
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCG
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCG
EST: gi|88333856|gb|CI645270.1|CI645270
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33800764|gb|CF326253.1|CF326253
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|5701687|gb|AU062820.2|AU062820
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218495485|gb|FG958236.1|FG958236
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88360470|gb|CI608396.1|CI608396
EST:     TTCTACGTAAGCCCTGAGGCCAAACTTTTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218483201|gb|FG946355.1|FG946355
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58588918|gb|CF987226.1|CF987226
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218478223|gb|FG961149.1|FG961149
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88314353|gb|CI604837.1|CI604837
EST:     TCTACGTCAGCCCTGAGGCCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TCTACGTCAGCCCTGAGGCC-AAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88338182|gb|CI677180.1|CI677180
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58598392|gb|CK008920.1|CK008920
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218501770|gb|FG965921.1|FG965921
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|117234791|gb|CT847888.1|CT847888
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88725900|gb|CI747412.1|CI747412
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTC
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTC
EST: gi|218479242|gb|FG969145.1|FG969145
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|14191961|gb|AU184172.1|AU184172
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58586741|gb|CF985049.1|CF985049
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33661533|gb|CF292500.1|CF292500
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|87018504|gb|CI252258.1|CI252258
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|11565270|gb|AU165906.1|AU165906
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88694232|gb|CI738270.1|CI738270
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACC
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACC
EST: gi|55828230|gb|AU068954.2|AU068954
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33809510|gb|CF330637.1|CF330637
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|427596|gb|D23729.1|D23729
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTTCAGCTTTCTTCGGT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTT-CTGCGGT
EST: gi|88736894|gb|CI760402.1|CI760402
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88241267|gb|CI241116.1|CI241116
EST:     GGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCCTCTGCGGTT
genomic: GGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|38477557|gb|CF961690.1|CF961690
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTATGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33659711|gb|CF282324.1|CF282324
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58677343|gb|CK066030.1|CK066030
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88395369|gb|CI611286.1|CI611286
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33822772|gb|CF337190.1|CF337190
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218502935|gb|FG945475.1|FG945475
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCANNAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|33692256|gb|CF320495.1|CF320495
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58695727|gb|CK084414.1|CK084414
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|58597895|gb|CK008423.1|CK008423
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTG
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTG
EST: gi|33656035|gb|CF278649.1|CF278649
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218491861|gb|FG947760.1|FG947760
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|11171566|gb|AU163851.1|AU163851
EST:     TCTACGTCAGCCNTGAGGCCAAAACTTCTGTTTGTGGTCCGCATCCGTGG                         -ATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TCTACGTCAGCCCTGAGGCC-AAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|88718877|gb|CI742387.1|CI742387
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAG
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAG
EST: gi|33693227|gb|CF321466.1|CF321466
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|218485429|gb|FG969304.1|FG969304
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|29617931|gb|CB622943.1|CB622943
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|89167331|gb|CI252862.1|CI252862
EST:     GTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
genomic: GTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTT
EST: gi|568087|gb|D38922.1|D38922
EST:     TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCCAAGACCAGGAAGATCTT
genomic: TTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 58 (downstream exon)
Score: 176

GAGAAGGAGCTTGTGCAGCTCAAGCGTGAGGCTCGGATGAAGGGTGGGTTCTACGTCAGCCCTGAGGCCAAACTTCTGTTTGTGGTCCGCATCCGTGGgtgagaaact ... ctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG
                           cattgac  putative branch site (score: 176)
                                              tttatgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT