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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaacatgattttataaaggatgaaccatgattagatttctactgttgattctttttcaatctagtatatgatcatcttatggacattttgctactgtagGTTTTCTATTATTTCGACTGGTGGCACAGCATCAAGCCTGGAAGCAGCTGGAGTTAATGTTACAAAAGTTGAACAAATTACAAATTTTCCTGAAATG

Basic information

species Oryza sativa
transcript LOC_Os08g10570.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g10570.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G368902_T01 (Zea mays), 3'ss of exon 3
----gaaacatgattttataaaggatgaaccatga--ttagatttctactgttgattctttttcaatctagtatatgatcatcttatggacattttgctactgtagGTTTTCTATTATTTCGACTGGTGGCACAGCATCAAGCCTGGAAGCAGCTGGAGTTAATGTTACAAAAGTTGAACAAATTACAAATTTTCCTGAAATG
     ||  |||  |||| | | ||| |||||||   | ||| || |  |  || |  | |||   | || |||||  |||| | | |    ||||||| ||||||||||||||||||||| ||||||||||| ||||||||  |||||||| |||| ||||||||||||||||||||| |||||||| | ||||||||||||
tagcaaagtatgggtttacataagattaaccatggattcagaattgtctttatgttgatatttt--tttattatat--tcatgtgaag--ttttttgctcctgtagGTTTTCTATTATTTCCACTGGTGGCACGGCATCAAGTTTGGAAGCATCTGGTGTTAATGTTACAAAAGTTGAAGAAATTACACAGTTTCCTGAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattctttttcaatctagtatatgatcatcttatggacattttgctactgtagGTTTTCTATTATTTCGACTGGTGGCACAGCATCAAGCCTGGAAGCAGCTGGAGTTAATGTTACAAAAGTTGAACAAATTACAAATTTTCCTGAAATG
 tgttgat  putative branch site (score: 4)
                                         ttttgct  putative PPT
       tttttcaat  TA-rich tract