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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagtaaattaaattatttgatcttttcatggctgaattaacttctcaactttgttactttatctcactaggctttagctaatcatcatctaattatatattaagaaggccaagccaattatttattcctggctactgaactattattcagaacttaacacattatgatgtcattcagGTTTGGTCGAGTGAATTTTGAAGACCCAAATTTCAACATTGGCTTGCCTGTTTTCACCGTACATGGGACTCATGATGGCCCAGCAGGAGTG

Basic information

species Oryza sativa
transcript LOC_Os08g08030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08030.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G309109_T01 (Zea mays), 3'ss of exon 3
gtgcagtaaattaaattatttgatcttttcatggctgaattaacttctcaactttgttactttatctcactaggctttagctaatcatcatctaattatatattaagaaggccaagccaattatttattcctggctactgaactattattcagaacttaacacattatgatgtcatt-cagGTTTGGTCGAGTGAATTTTGAAGACCCAAATTTCAACATTGGCTTGCCTGTTTTCACCGTACATGGGACTCATGATGGCCCAGCAGGAGTG
                                                                           ||  || |  |||||| |   | | | | ||     | |||   |||   |||  || |||  ||  | | | |     | ||  ||  |  |||| |  || ||||||| ||| |||||||| |||||||||||| | ||| ||||||||||| || |||||| | ||||||   || |||   ||  | |||   
--------------------------------------------------------------------------gttcggcaatccatcat-tctctctctgtcaactcc-cgaagatgatt--ctatgactagctg-tgttccagtct-----aattgtcaagtagtgattttttttcagGTTTTGTCAAGTGAATTATGAAGACCCAAACTACAAAATTGGCTTGCCCGTGTTCACCATCCATGGGGACCAAGATTATCCTACTGGAACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcctggctactgaactattattcagaacttaacacattatgatgtcattcagGTTTGGTCGAGTGAATTTTGAAGACCCAAATTTCAACATTGGCTTGCCTGTTTTCACCGTACATGGGACTCATGATGGCCCAGCAGGAGTG
                             acttaac  putative branch site (score: 3)
               aactattatt  TA-rich tract