1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgataattttgtattgtctgtactctatatcatgcttttcatcattcttgtcagtgttatgcattgcttttgatgtattttttctgtatttatctggcagAGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTATGAGATCA
species | Oryza sativa |
transcript | LOC_Os08g06200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTAGACAAGACTTTTGAGGAGAGGGATACACTAAATGAGCAAATTGTG AGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTACGTTATEST: gi|88574684|gb|CI666453.1|CI666453
genomic: CGCTAGACAAGACTTTTGAGGAGAGGGATACACTAAATGAGCAAATTGTGgtatggaatc ... tatctggcagAGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTAT
EST: CGCTAGACAAGACTTTTGAGGAGAGGGATACACTAAATGAGCAAATTGTG AGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTAT
genomic: CGCTAGACAAGACTTTTGAGGAGAGGGATACACTAAATGAGCAAATTGTGgtatggaatc ... tatctggcagAGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTAT
tcttgtcagtgttatgcattgcttttgatgtattttttctgtatttatctggcagAGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTATGAGATCA
ttttgat putative branch site (score: 19)
ttttttctgtattt putative PPT
atgtattttttctgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataattttgtattgtctgtactctatatcatgcttttcatcattcttgtcagtgttatgcattgcttttgatgtattttttctgtatttatctggcagAGGTCCATTAATGAGGCTGCAACTGATTGGGGACTGAAATGCCTCCGTTATGAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -tgtattg
- - - - - - - - - - - - - - atcatgc
- - - - - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg