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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaaagttgcttgtaggtctattaaacttgtatgatcattttataattgatttatttctctagccagttaacttcctaggtgtgaattccttctaattgtttgcgtgattcttttgatataagcagGCTAGCCCTTCAGCTGGTGCTTTCCCTCAGCTGATTGGTTCACAACAGAATATCCATGATAATAATGAATTAGCCACAGTTTCTGCACCCATGCTACCAC

Basic information

species Oryza sativa
transcript LOC_Os08g06140.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598076|gb|CK008604.1|CK008604
EST:     AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAG                         C
genomic: AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAGgtcagtaaag ... atataagcag-
EST: gi|58598076|gb|CK008604.1|CK008604
EST:     AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAG                         C
genomic: AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAGgtcagtaaag ... atataagcag-
EST: gi|58598076|gb|CK008604.1|CK008604
EST:     AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAG                         C
genomic: AAGTAAACATCTCTCACATGCCTCATCATGGGCTTGATGGAGGAGCTAAGgtcagtaaag ... atataagcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctaggtgtgaattccttctaattgtttgcgtgattcttttgatataagcagGCTAGCCCTTCAGCTGGTGCTTTCCCTCAGCTGATTGGTTCACAACAGAATATCCATGATAATAATGAATTAGCCACAGTTTCTGCACCCATGCTACCAC
                                    attcttttgatataa  TA-rich tract