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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA

Basic information

species Oryza sativa
transcript LOC_Os08g06040.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 3
----------gtaaaccatccaaacacattacatgctc--ctttcttgcgatcagttggtgaaccaatctatctgcacct-----------cgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCT--AAATGATTGCAAGATAGA
           | || | ||  ||   |    ||| |    ||||||      | ||| || |  |   |   | |   |            | || ||||| || ||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||  ||||   || |  ||     |   
gtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAAAAGACAAAGGAAAAGCAAGCTTTGAAGGGCTGAGTTTTG--

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 3
-----------------------gtaaaccatcca-aacacattacatgctcctttcttgcgatca-gttggt-----gaaccaatctatctgcacctcgc-----agGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                       || |   ||  | || |  |  |||| |    |  |  | | | ||||||     | |    | ||| ||   || |      ||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||||||||||||| | ||||| |||  |||   |        |  | ||
gtttgttttactctacttttacagttatatatttataataactcgcatgatttaattatatggtaaagttggtttatagcatgcttttatttgtgtctggttctatagGATTATCCGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGGCTTGAATTTGA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
-----------gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaaccaatcta------------tctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCT--AAATGATTGCAAGATAGA
            | ||   ||  |    | ||        |||| |      | || ||| |  |   |             ||||   ||   || ||||| || ||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||   ||||   || |  ||     |   
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT---

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 3
----------gtaaaccatc--caaacacattacatgctcctttcttgcgatcagttggtgaacca-atctatctgcacctc-gcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
           || ||  |   ||   | ||   ||  |   |  |     | | ||| |     | || |||||     ||   ||||| ||||| || || || || || ||||| ||||||||||||||||| ||||||||||||||| | ||||| |||   ||   |        |  | ||
gtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAGGCCTCAAAGGCTTGAATTTGA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtaaaccatccaaacacattacatgctcctttcttgcgatca--gttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGC--TAAATGATTGCAAGATAGA
    ||  |   |  | ||   ||| |   |  ||||||  ||  |  |    | | |  |    | |     |  ||||||| || |||| || ||||| || || |||||||||||||||||||| |||||| | |||||| | || || ||| | ||   |||   ||  |||| |  
gtaagtgtattgtaaagacctcttaaaaattggtttctttagagtattgcaactaatcttactcttttctctgttccagGATCGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAA--

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G69620.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCT---AAATGATTGCAAGATAGA
              | ||   |  |    | ||      |  |  |    ||  | |   | ||    | |   ||    |  ||| ||||| || || ||  | || |||||||| ||||||||||||||||| |||||| | |||||| | ||||| |||   |||   || ||||    |      
gttcgttcttgagttcaattttgtatttgctttgtgcctttgtaaccaaagacaaatc--ttaatggttgttcttgtgtgttacagAATCATTCGTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAAAGGAAAAGGTTGCTCCCAAGTGATCTAGACCC---

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G26880.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaaccatccaaacacattacatgctcctttc-ttgcgatcagtt-ggtgaacc--aatcta--------tctgcacctcg-cagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
||      ||||      ||   |  || ||   || | || | || ||||  |   ||  ||        | || |   || ||||||||| ||||| ||  | ||||| ||||| |||||||||||||| ||||||||  |||| ||| | ||||| ||   |||           ||| |   
gtttgttgtccatcttacttgagtcatctttctattacaataaatttggtgttctttaacgtaatgttgtttttggattccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
------------------------gtaaaccatccaaacacattacatgctcctttcttgcgatcag--ttggtgaaccaatctatctgc---------acctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                        ||   |  ||  | ||  | | |||     || ||  |||||   ||| || ||   ||| | |              | | ||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| |||||| | ||||| |||  |||   |        || |  |
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagtt-ttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 3
gtaaaccatc-caaacacattacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCT--AAATGATTGCAAGATAGA
|||||  ||  |||    ||| | |  | |||   ||| |  |||||| |     ||  |  |     |  |||||| || || ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| | ||||| |||  |||   |||   ||| || ||   
gtaaatgatttcaagtttatttcgt--ttcttaactgc-actagttggggttttgattaa--taactttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGAGTTGAAAAATG--

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------------gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaacca--atctatct-gcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                         |       | |      | || ||      || |  |      |  | || |   ||| || | |  |   |||| || ||||| |||||| | || ||||| |||||||| ||||||||||| ||||||||||||||| | ||||| || |  |||         |||     |
ttacatgtattgttatagttgtgcatgtttgccctagctgtgtgacttggaatcatcatctgtatttctaataaatcgtgatcaattttgtccgatgcagCATTATCCGAGCTTTTCTAGTTGAGGAACAGAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAGACCCAATCCTAA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S39_364V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------gtaaaccatccaa---acacattacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAA-ATGATTGCAAGATAGA
                           | ||    |  |    |||| | ||||| |  | | | |  ||   ||  |   ||||||  | ||    ||  || || |||||||||||| |||| ||||||||||| ||||| ||||||||  | |||||||||||| ||||||| ||    |||   | || |  |   ||| 
catgatttatagacataatgcgttgttgcaatttctttagtctacacttaacatg-tgatgtttagttattgcttaattttccaatcattgtgtgattc--agCATTATCCGGGCTTTTCTGGTGGAGGAGCAGAAAATTGTTAAGAAGGTTCTCAAGATCCAGAAGTCCAAGGAGAAAGTGGCTGCCAAGACTCAATCTTAG-

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S57_72V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------gtaaaccatccaaacacattacatgctcc-------tttcttgcgatcagtt-ggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                    |||  | ||      || ||  | |  |       ||| | | |||  ||| ||  ||  | |  |  || |   ||||| || || ||||||||| |||||||||||||||| ||||| ||||||||  | |||||||||||||  ||||| || |  |||         |||  |  |
aaaatcgttggaagtctggctaagtcgtctctggccagtaggtacgtcggcataatttgtagtgatatgtttggctaaggatttaagttgtatgacgcagCATTATTCGGGCTTTTCTGGTCGAGGAGCAGAAAATTGTAAAGAAGGTCCTCAAGATCCAGAAGAGTAAGGAGAAATTGGCTGCCAAGGCTCAAACTTAA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S76_47V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------gtaaaccatccaaacacattacatgctcctt----tcttgcgatcagttggtgaaccaatctatctg-cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                       |   ||  | | | ||||| |   | |   |    | |   ||||||    | |||  ||  | ||| |   |  ||| ||||| || || ||  | |||||||||||||| || || ||||||||  ||||||| |||||| ||||||| || |  |||         |||  |  |
gaaatattgtattccatttaattgattacagtgccaccacatcattcgtttaatatcgtttctggatcagaccct-aacgtatggaactgtcgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCTGAAGATTCAGAAGTCCAAGGAGAAATTGGCTGCCAAGGCTCAATCTTAA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S39_344V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------gtaaaccatccaaacacatta-catgctc--ctttcttgcgatcagttggtgaa---ccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                       | |||  | |       ||  | | ||   | | |||| |||||  |  || |   |  | | |  |  |  | |||| ||||| || |||||  | |||||||||||||||||||||||||| ||  |||||||||||||| | ||||| || |  |||     |   ||   |  |
attagtcattgtctgatttctttttaacagttctgttgtgttggccttctgggcatgcttg-gatcatgttttgcatttctgaaccaagtaaattttgcagCATCATTCGCGCTTTCCTTGTCGAGGAGCAGAAGATTGTGAAGAAAGTACTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAAACTCAGTCTTAA

upper sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S2_268V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------gtaaaccatccaaacacattacatgctcc-------tttcttgcgatcagtt-ggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                    |||  | ||      || ||  | |  |       ||| | | |||  ||| ||  ||  | |  |  ||     ||||| || |||||||||||| |||||||||||||||| ||||| ||||||||  | |||||||||||||  ||||| || |  |||         |||  |  |
aaaatcgttagaagtcaggctaagtcgtcgctggccagtaggtacgtcggcattatttgtagtgatatgtttggctaaggatttaagttgtgtgacgcagCATTATCCGGGCTTTTCTGGTCGAGGAGCAGAAAATTGTAAAGAAGGTCCTCAAGATCCAGAAGAGTAAGGAGAAATTGGCTGCCAAGGCTCAATCTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86509453|gb|CI152086.1|CI152086
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88522125|gb|CI449859.1|CI449859
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88471627|gb|CI408898.1|CI408898
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88515539|gb|CI443193.1|CI443193
EST:     GTGAACCGTCCTTACGGTGGTGTCCTTTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88992083|gb|CI035221.1|CI035221
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88527054|gb|CI455167.1|CI455167
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88392096|gb|CI683927.1|CI683927
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|10794904|gb|AU108870.1|AU108870
EST:     GTGAACCGT-CTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|86253316|gb|CI058241.1|CI058241
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88976264|gb|CI024481.1|CI024481
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|287280|gb|D16082.1|D16082
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88271756|gb|CI387809.1|CI387809
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|30228525|gb|CB966416.1|CB966416
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|86418011|gb|CI032220.1|CI032220
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|15847674|gb|BI795838.1|BI795838
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88487268|gb|CI424539.1|CI424539
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88517374|gb|CI445028.1|CI445028
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88374604|gb|CI518471.1|CI518471
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88384323|gb|CI551249.1|CI551249
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|163920878|gb|EG710089.1|EG710089
EST:     GTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCTGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88490488|gb|CI427760.1|CI427760
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88506594|gb|CI434100.1|CI434100
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|58674240|gb|CK062926.1|CK062926
EST:     GTGAACCGTCCTTATGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATTCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88419273|gb|CI513694.1|CI513694
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88285985|gb|CI515109.1|CI515109
EST:     CTGGTACTCCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: CTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88320229|gb|CI520773.1|CI520773
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTNTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88409145|gb|CI556853.1|CI556853
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88427913|gb|CI554421.1|CI554421
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|23513092|gb|BU672971.1|BU672971
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|3090473|gb|C93460.1|C93460
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCNGGCTTTTTTGGTCGAGGAGCAGANGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88381733|gb|CI682405.1|CI682405
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88212849|gb|CI210700.1|CI210700
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|427534|gb|D23601.1|D23601
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTNGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGT
EST: gi|86423139|gb|CI060712.1|CI060712
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88511547|gb|CI439053.1|CI439053
EST:     NTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88482368|gb|CI419639.1|CI419639
EST:     TGAACCGTCCTTACGGT-GTAGTCCTGTCTGGTACTACAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGANGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: TGAACCGTCCTTACGGTGGT-GTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88962927|gb|CI025413.1|CI025413
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGC-TTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|11565085|gb|AU165721.1|AU165721
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|86253281|gb|CI058206.1|CI058206
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88208339|gb|CI208188.1|CI208188
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|86416360|gb|CI030371.1|CI030371
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCNNNNNNNGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGC-TTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGT
EST: gi|23514705|gb|BU673770.1|BU673770
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|89170363|gb|CI039640.1|CI039640
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88345129|gb|CI628383.1|CI628383
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCNNNNNNNGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTT-GGTCGAGGAGCAGAAGATTGTGAAGAAGGTGT
EST: gi|88544067|gb|CI474131.1|CI474131
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88409322|gb|CI559420.1|CI559420
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|89198979|gb|CI253053.1|CI253053
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|86531179|gb|CI171385.1|CI171385
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88263329|gb|CI367103.1|CI367103
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|4879891|gb|AU064190.1|AU064190
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGGCTTTTTTNGGGTCGAAGGAGCAGAAAGATTGTGAAGAA
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGG-CTTTTTT-GG-TCGA-GGAGCAGAA-GATTGTGAAGAA
EST: gi|9788908|gb|BE530918.1|BE530918
EST:     GTGAACCGTCCTTATGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATTCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88484385|gb|CI421656.1|CI421656
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88520592|gb|CI448246.1|CI448246
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|30227232|gb|CB965124.1|CB965124
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88381121|gb|CI525891.1|CI525891
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88413236|gb|CI523797.1|CI523797
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|88413946|gb|CI530918.1|CI530918
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
EST: gi|4879856|gb|AU064155.1|AU064155
EST:     GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAG                         GATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT
genomic: GTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 71 (downstream exon)
Score: 108

TGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATCGCAGGACCGTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAGAGAGAGgtaaaccatc ... cacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA
                                   aatctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaaccaatctatctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA