1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcactgttcaagtgttcatcatctgaacttaactgaattttttattagatcttggcatggctgaaactgatctggaatctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC
species | Oryza sativa |
transcript | LOC_Os08g03350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|89162523|gb|CI099215.1|CI099215
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|86598121|gb|CI278511.1|CI278511
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: CCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|86853761|gb|CI250012.1|CI250012
genomic: CCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|86497707|gb|CI140340.1|CI140340
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|29630538|gb|CB635547.1|CB635547
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|4716084|gb|AU057200.1|AU057200
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|89177928|gb|CI391107.1|CI391107
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTGTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGEST: gi|88901693|gb|CI001801.1|CI001801
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
EST: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTG CGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
genomic: ATTCCCTCCCGGCCTCACGCTTCGCCTCATCGCAAGAACACTCTACGTTGgtaagcactg ... atctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTG
actgaattttttattagatcttggcatggctgaaactgatctggaatctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC
aactgat putative branch site (score: 57)
attttttattagatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcactgttcaagtgttcatcatctgaacttaactgaattttttattagatcttggcatggctgaaactgatctggaatctgtgcagCGTTCACCATGTTCATCGCGATCACCTTCCCGTTCTTCGGTGGATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA