1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtaaataataatagtaccttctccttcatgccattctttccaagagaaaaaaaaaagaagaagagaggttgctttgctttcttgattgcacacatgtacatcaacttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG
species | Oryza sativa |
transcript | LOC_Os08g01760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGGTGCCTTCATAATGCCCTGT-GGAATTGCTTCTACTGTGTTAAG GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAEST: gi|44674419|gb|CR287853.1|CR287853
genomic: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAGgtaagtaaat ... cttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
EST: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAG GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAEST: gi|7593811|gb|AU065734.2|AU065734
genomic: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAGgtaagtaaat ... cttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
EST: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAG GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAEST: gi|11863309|gb|AU065733.2|AU065733
genomic: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAGgtaagtaaat ... cttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
EST: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAG GGNCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAEST: gi|66916958|gb|CX103806.1|CX103806
genomic: TTGTGGGTGCCTTCATAATGCCCTGTGGGAATTGCTTCTACTGTGTTAAGgtaagtaaat ... cttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
EST: GCTTCTACTGTGTTAAG GGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
genomic: GCTTCTACTGTGTTAAGgtaagtaaat ... cttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGA
gaagagaggttgctttgctttcttgattgcacacatgtacatcaacttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG
ttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaataataatagtaccttctccttcatgccattctttccaagagaaaaaaaaaagaagaagagaggttgctttgctttcttgattgcacacatgtacatcaacttgatatagGGCCAAGAAGATCTGTGTGAGTCTTTCTTTGCATACAACCGTGCTAAAGGAACGCTATACGATGGTCAAACCCGATTATTCCTTCGTAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA