1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagccgagcttacttacagtccacattgcctctctaggttgatcccctataaccaatttgtaacttgctgttactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG
species | Oryza sativa |
transcript | LOC_Os07g48410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58598485|gb|CK009013.1|CK009013
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|86904436|gb|CI308646.1|CI308646
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58603862|gb|CK014390.1|CK014390
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58673551|gb|CK062237.1|CK062237
genomic: GGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58666711|gb|CK055397.1|CK055397
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58607189|gb|CK035222.1|CK035222
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCGAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCEST: gi|58676590|gb|CK065277.1|CK065277
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGC-AGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|7652196|gb|AU089733.1|AU089733
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58660017|gb|CK048697.1|CK048697
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|29666734|gb|CB663009.1|CB663009
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58599584|gb|CK010112.1|CK010112
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58671842|gb|CK060528.1|CK060528
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|58612737|gb|CK040449.1|CK040449
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: AGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCEST: gi|29681057|gb|CB677332.1|CB677332
genomic: AGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
EST: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAG GAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
genomic: GTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGgcaagccgag ... tactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCC
tgcctctctaggttgatcccctataaccaatttgtaacttgctgttactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG
ttgtaac putative branch site (score: 2)
ttacttt putative PPT
aatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagccgagcttacttacagtccacattgcctctctaggttgatcccctataaccaatttgtaacttgctgttactttgcagGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACTACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC