1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtagtactagttttcttcactagtgtttgtgttacccttactggacaatttagctcacaagtgtaatttgtttcttgtgtgttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACEST: gi|88307564|gb|CI643413.1|CI643413
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAEST: gi|569629|gb|D40478.1|D40478
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAA
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACEST: gi|88311877|gb|CI577483.1|CI577483
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACGEST: gi|58596898|gb|CK007426.1|CK007426
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACG
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAACEST: gi|88402802|gb|CI613250.1|CI613250
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
EST: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG ATCAAAGAATTGAATTCCTATG
genomic: AGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATGgttggtagta ... gttaaaacagATCAAAGAATTGAATTCCTATG
ccttactggacaatttagctcacaagtgtaatttgtttcttgtgtgttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
agctcac putative branch site (score: 22)
taatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtagtactagttttcttcactagtgtttgtgttacccttactggacaatttagctcacaagtgtaatttgtttcttgtgtgttaaaacagATCAAAGAATTGAATTCCTATGTCACATTGAGGAAAAC
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