1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatactcgcaatctaaactagtatcatgcctgtaatgtttggattctgaaatataatcactgatgtatgttgtttttcctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAGAAGAGGCGGCTCTGGTGGCTCCTGATTATGGTGCGGTTGCGGAATATG
species | Oryza sativa |
transcript | LOC_Os07g42450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|218493254|gb|FG945789.1|FG945789
genomic: TGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|29680688|gb|CB676963.1|CB676963
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|88956487|gb|CI092733.1|CI092733
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: AGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGTAAGCGAAGGAGCAAGAGGAAEST: gi|2312443|gb|C28598.1|C28598
genomic: AGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|58681997|gb|CK070684.1|CK070684
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: GGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|87038852|gb|CI193474.1|CI193474
genomic: GGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|86255009|gb|CI017129.1|CI017129
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: CACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|66915310|gb|CX102158.1|CX102158
genomic: CACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAAGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGEST: gi|29680643|gb|CB676918.1|CB676918
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGG
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|89175022|gb|CI041100.1|CI041100
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: CTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|218496598|gb|FG964018.1|FG964018
genomic: CTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|25801336|gb|CA757297.1|CA757297
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGEST: gi|87038900|gb|CI193522.1|CI193522
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAG
EST: TTCTCCAGATGCGTGG-ACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|86530972|gb|CI171178.1|CI171178
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: AGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|88984221|gb|CI020139.1|CI020139
genomic: AGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: ACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|218498639|gb|FG958416.1|FG958416
genomic: ACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|87028612|gb|CI266011.1|CI266011
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: GTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|8857538|gb|AU094856.1|AU094856
genomic: GTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGAAATCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAEST: gi|86854195|gb|CI254140.1|CI254140
genomic: TTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
EST: ACAAGTGGGATGTCATG GTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
genomic: ACAAGTGGGATGTCATGgtatactcgc ... ctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAA
aatgtttggattctgaaatataatcactgatgtatgttgtttttcctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAGAAGAGGCGGCTCTGGTGGCTCCTGATTATGGTGCGGTTGCGGAATATG
cactgat putative branch site (score: 90)
tgttgtttttcctttt putative PPT
attctgaaatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactcgcaatctaaactagtatcatgcctgtaatgtttggattctgaaatataatcactgatgtatgttgtttttcctttttgtagGTTGATCTGTTCTTCTACAGGGACCCAGAGGAAGCGAAGGAGCAAGAGGAAGAAGAGGCGGCTCTGGTGGCTCCTGATTATGGTGCGGTTGCGGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG