1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtggtggtgattgtgacatattacaactctgttcagaatcctagtatctgccacaagctgtggatgcaatcagtcactctttttcccgttgaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACCCAAGCTGTGGTCACAGGTGGAGGGATTGACGGCAAGGTTCATGGTGCT
species | Oryza sativa |
transcript | LOC_Os07g42395.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCNNNNNNNCAG GCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACEST: gi|163925612|gb|EG710777.1|EG710777
genomic: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCTTTTTTTCAGgtcagtgtat ... gaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAAC
EST: AAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCNNNNNNNNCAG GCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAAEST: gi|58679271|gb|CK067958.1|CK067958
genomic: AAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCTTTTTTT-CAGgtcagtgtat ... gaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAA
EST: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCNNNNNNNCAG GCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACEST: gi|163925465|gb|EG713354.1|EG713354
genomic: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCTTTTTTTCAGgtcagtgtat ... gaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAAC
EST: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCNNNNNNNCAG GCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAAC
genomic: GAAGTATTAAATGTTACAACTGTGGCCATCCAGAGGCTGCTTTTTTTCAGgtcagtgtat ... gaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAAC
atctgccacaagctgtggatgcaatcagtcactctttttcccgttgaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACCCAAGCTGTGGTCACAGGTGGAGGGATTGACGGCAAGGTTCATGGTGCT
ctctttttcccgttg CT-rich tract
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtggtgattgtgacatattacaactctgttcagaatcctagtatctgccacaagctgtggatgcaatcagtcactctttttcccgttgaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACCCAAGCTGTGGTCACAGGTGGAGGGATTGACGGCAAGGTTCATGGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc