Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatttttcccctttttttattctcttacattttatgttcagtgttgtgaattttctgaatgttgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCCTTCAGCTTCAACCCCTGATGTTGCTGATGCAAAG

Basic information

species Oryza sativa
transcript LOC_Os07g42300.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g42300.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G153569_T02 (Zea mays), 3'ss of exon 3
gtatgcatttttcccctttttttattctcttacattttatgttcagtgttgtgaattttctgaatgttgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCCTTCAGCTTCAACCCCTGATGTTGCTGATGCAAAG
||||||  || |   | ||| |  |||      ||    |   |||||  |||   |         |  ||||||||||||||||| || || || | ||| || ||||| ||| |  |||| ||||||||||||||||  | |||||||||||||| | ||
gtatgcccttcttggcctttatgtttcctaggtatcccgttagcagtga-gtgtgctaataatccatactatttcagTGGAGTTACCGCAGAGGGCCTAGGTGTTAAGGTTGAGCCATCAGCGGTTCCTTCAGCTTCAATTCTTGATGTTGCTGATGGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8857934|gb|AU095252.1|AU095252
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218483403|gb|FG957310.1|FG957310
EST:     CTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: CTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|109974322|gb|DT806845.1|DT806845
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218488272|gb|FG957711.1|FG957711
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218504669|gb|FG959569.1|FG959569
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|163919727|gb|EG711657.1|EG711657
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCTCTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218484393|gb|FG946270.1|FG946270
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33793828|gb|CF322802.1|CF322802
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33680932|gb|CF309171.1|CF309171
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|55410327|gb|CV722703.1|CV722703
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218486383|gb|FG949948.1|FG949948
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218487740|gb|FG962547.1|FG962547
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58585610|gb|CF983918.1|CF983918
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33679175|gb|CF307414.1|CF307414
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218490120|gb|FG959263.1|FG959263
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTGCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218500832|gb|FG957607.1|FG957607
EST:     ACCAATG-TGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58604129|gb|CK014657.1|CK014657
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58585628|gb|CF983936.1|CF983936
EST:     ACCAATGTTGCTAGGTGGTGTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218497055|gb|FG946052.1|FG946052
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218487487|gb|FG950696.1|FG950696
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58610571|gb|CK038283.1|CK038283
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATGGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|88350619|gb|CI631342.1|CI631342
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTTGACAGNTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218481608|gb|FG958672.1|FG958672
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|88352964|gb|CI630142.1|CI630142
EST:     ACCAATGTTGCTAGGTGGTTTA-TCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCG
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCG
EST: gi|218479613|gb|FG956760.1|FG956760
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218481300|gb|FG969692.1|FG969692
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58685071|gb|CK073758.1|CK073758
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58596563|gb|CK007091.1|CK007091
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58676446|gb|CK065133.1|CK065133
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|88345100|gb|CI628354.1|CI628354
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|163927663|gb|EG710491.1|EG710491
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|88732884|gb|CI756061.1|CI756061
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCG
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCG
EST: gi|58680576|gb|CK069263.1|CK069263
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|286985|gb|D15791.1|D15791
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TTGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218499366|gb|FG951061.1|FG951061
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTACC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|38470541|gb|CF954672.1|CF954672
EST:     CTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: CTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218494827|gb|FG945588.1|FG945588
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33793482|gb|CF322624.1|CF322624
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218502427|gb|FG965006.1|FG965006
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58687056|gb|CK075743.1|CK075743
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33659429|gb|CF282042.1|CF282042
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58598400|gb|CK008928.1|CK008928
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|38478961|gb|CF963094.1|CF963094
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58603875|gb|CK014403.1|CK014403
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33806188|gb|CF328974.1|CF328974
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218479067|gb|FG962848.1|FG962848
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAANGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|29645213|gb|CB650220.1|CB650220
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218485855|gb|FG956449.1|FG956449
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|33655216|gb|CF277830.1|CF277830
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218501608|gb|FG970643.1|FG970643
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58696285|gb|CK084972.1|CK084972
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|218494225|gb|FG955538.1|FG955538
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58691095|gb|CK079782.1|CK079782
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|58609286|gb|CK037319.1|CK037319
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
EST: gi|88312714|gb|CI587622.1|CI587622
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTTGCTGATGGTCAAGGCTGTAAATGGTCGAGTCGACAGCTGT
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACT-GCTGATGGTCAAGGC-GTAAA-GGTCGAGTCGACAGCTGT
EST: gi|88360243|gb|CI611962.1|CI611962
EST:     ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAG                         TGGAGTTACTGGTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC
genomic: ACCAATGTTGCTAGGTGGTTTACTCACATTGATGCACTCCTACGTCTGAGgtatgcattt ... tgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctcttacattttatgttcagtgttgtgaattttctgaatgttgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCCTTCAGCTTCAACCCCTGATGTTGCTGATGCAAAG
    ctcttac  putative branch site (score: 3)
       ttacattttatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcatttttcccctttttttattctcttacattttatgttcagtgttgtgaattttctgaatgttgtatttcagTGGAGTTACTGCTGATGGTCAAGGCGTAAAGGTCGAGTCGACAGCTGTTCCTTCAGCTTCAACCCCTGATGTTGCTGATGCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG