1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgacctaagaaagaacatgattgtttactaaagcattgttataaagctgtgacatcatattctcatggcttatcttctcttagacgttcgctactagttttcctgtgtttattgtgtatagttccaaactagatatgtaaattctatcttcttttttttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAGTAGCAATTTCCTTCTCATCTGTTTTTGGTAGCTGTTTGCCTTGCAAAC
species | Oryza sativa |
transcript | LOC_Os07g39010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTG ATTGATCGCTTTGGACATTTTAAACTGTEST: gi|29631087|gb|CB636096.1|CB636096
genomic: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgaccta ... ttttatccagATTGATCGCTTTGGACATTTTAAACTGT
EST: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTG ATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAEST: gi|29638655|gb|CB643664.1|CB643664
genomic: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgaccta ... ttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTA
EST: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTG ATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAEST: gi|117245134|gb|CT843359.1|CT843359
genomic: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgaccta ... ttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTA
EST: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTG ATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTA
genomic: TTTCTGGTCAATTGGCAGATGGCTTCGCAACAATCTTCGTTGGAGAACTGgtacgaccta ... ttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTA
tgtgtatagttccaaactagatatgtaaattctatcttcttttttttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAGTAGCAATTTCCTTCTCATCTGTTTTTGGTAGCTGTTTGCCTTGCAAAC
ttctatcttctttttt CT-rich tract
tagatatgtaaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgacctaagaaagaacatgattgtttactaaagcattgttataaagctgtgacatcatattctcatggcttatcttctcttagacgttcgctactagttttcctgtgtttattgtgtatagttccaaactagatatgtaaattctatcttcttttttttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAGTAGCAATTTCCTTCTCATCTGTTTTTGGTAGCTGTTTGCCTTGCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT