1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattgtgcacatacacggacatcaaacataactgttctctcatttactttgtgaactaatttgctcaaccttctgcttacccttattgtgtcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAGCCGTTGATTATTTGTCCACTACAAGGGTTATGCCAAGACTTGTAGAGG
species | Oryza sativa |
transcript | LOC_Os07g36470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAEST: gi|38479045|gb|CF963178.1|CF963178
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAEST: gi|38483054|gb|CF966856.1|CF966856
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCGTCGACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCEST: gi|58691898|gb|CK080585.1|CK080585
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTC-TCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGC
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAEST: gi|11442551|gb|BF430454.1|BF430454
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAEST: gi|58682821|gb|CK071508.1|CK071508
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAEST: gi|218495142|gb|FG957786.1|FG957786
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: CACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGC-TTTATCCTTTTATGATGCCEST: gi|58687201|gb|CK075888.1|CK075888
genomic: CACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
EST: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAG CTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
genomic: AACTGCTCATTCCTTTAATTTCTCCAGCTTCCACACAACAGTCGATCCAGgtatttgttg ... tcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCA
actttgtgaactaatttgctcaaccttctgcttacccttattgtgtcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAGCCGTTGATTATTTGTCCACTACAAGGGTTATGCCAAGACTTGTAGAGG
tgcttac putative branch site (score: 36)
aactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtgcacatacacggacatcaaacataactgttctctcatttactttgtgaactaatttgctcaaccttctgcttacccttattgtgtcatttgcagCTTCTCTACGAAACTTGCCTCTGCATCTGGCTTTTATCCTTTTATGATGCAGCCGTTGATTATTTGTCCACTACAAGGGTTATGCCAAGACTTGTAGAGG
-attgtgc
- - - - -catacac
- - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctcaa