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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcctctctgctatttagagcaggatccactggttcgtattatcatgttgatatttgtataaagttgatttacttgctttatgggcaatctttttccagGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCG

Basic information

species Oryza sativa
transcript LOC_Os07g34950.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g34950.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G022876_T01 (Zea mays), 3'ss of exon 3
-aatcctctctgctatttagagcaggatccactggttcgtattatcatgttgatatttgtataaagttgatttacttgctttatgggcaatctttttccagGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCG
 ||| ||  | |  ||  | | |   |||   |  |   | |      | ||   | |   |    ||  |||  ||||| | ||||| || || ||||||| ||||||||||||||||||||||| |||||||| |  || || || ||||| || ||||| ||||| |
aaatactagcagg-atgcaaatccctatcttgtcatgactctgcatgcgatgtcctattgttgggatttgtttcattgctatttgggctatattgttccagGATTGGCTATCAAAGATTTTTGGCAGGTTGATGAGCGTACTATTGTTTTTGTTGCTGATCCAACCTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgatatttgtataaagttgatttacttgctttatgggcaatctttttccagGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCG
                                            tctttttcc  CT-rich tract
      atatttgtataaagtt  TA-rich tract