1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctgaaaaaaaagcgttcattttaggttgctaaggtaggtgtcctgaatttgtctgcattgagctgaatatcttaagaaatctgtttctgttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCACGTTGAGTATCAAAAGATTTTTGCTAGGGACTTTTAAGTCTATTCTGCA
species | Oryza sativa |
transcript | LOC_Os07g34640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACG GGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCAEST: gi|88200025|gb|CI199875.1|CI199875
genomic: TCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACGgtactagcac ... gttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
EST: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACG GGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCAEST: gi|29661236|gb|CB657511.1|CB657511
genomic: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACGgtactagcac ... gttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
EST: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACG GGTGGCTCCAATTAGAATATACGATTATCTGTCAGAGATGGTTACCACTCAEST: gi|88249830|gb|CI249679.1|CI249679
genomic: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACGgtactagcac ... gttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
EST: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACG GGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCAEST: gi|86846335|gb|CI339901.1|CI339901
genomic: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACGgtactagcac ... gttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
EST: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACG GGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
genomic: ATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACGCATATCAAAACGgtactagcac ... gttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCA
tgaatttgtctgcattgagctgaatatcttaagaaatctgtttctgttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCACGTTGAGTATCAAAAGATTTTTGCTAGGGACTTTTAAGTCTATTCTGCA
tctgtttctgttctt CT-rich tract
aatatcttaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgaaaaaaaagcgttcattttaggttgctaaggtaggtgtcctgaatttgtctgcattgagctgaatatcttaagaaatctgtttctgttcttgcagGGTGGCTCCAATTAGAATCTACGATTATCTGTCAGAGATGGTTAACACTCACGTTGAGTATCAAAAGATTTTTGCTAGGGACTTTTAAGTCTATTCTGCA
- - -aaaaaaa
- - - - - - - - - - - - -ggttgct
- - - - - - - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaat