Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtaataaccgaaatttgtggtgcctgatctttacgtttttctatctttctgagctagtttttctgatcaatgcttcactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTTCAGGTAGGGATCATTCTTCTTGTGCATGCTTACTGCAATTAGATGTACA

Basic information

species Oryza sativa
transcript LOC_Os07g34589.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g34589.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G835323_T02 (Zea mays), 3'ss of exon 3
gtgtgtgtaataaccga--aatttgtggtgcctgatctttacgtttttctatctttctgagctagttt------ttctgatca--atgcttcactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTTCAGGTAGGGATCATTCTTCTTGTGCATGCTTACTGCAATTAGATGTACA
  || ||  |   | ||  || | |||   |||   |  |    |||     ||||||||  ||  ||      ||| | ||   ||||| | | || ||||||||||| || ||||||||||||||||| ||||| || ||||| || || |||                                              
--gtatggtactcctgatgaactcgtgtcccctaggccatcgacttt--agcctttctgaattatcttgatggattcggttctgcatGCTGCCCGCTATAGGTCATTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88570587|gb|CI661960.1|CI661960
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGAT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGAT
EST: gi|10931460|gb|AU161734.1|AU161734
EST:     AAGAGTTTTGCTGNAATGGTACTGTTGTCCAGGACCCAGAGTTTG-CCAG                         GTCATT-AACTTCAAGGTGATCAGAGGGAAAACGTNTCAA-TTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|33822543|gb|CF337077.1|CF337077
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTT
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTT
EST: gi|88342318|gb|CI658973.1|CI658973
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTC
EST: gi|33655791|gb|CF278405.1|CF278405
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|33657184|gb|CF279798.1|CF279798
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|55433439|gb|CV729824.1|CV729824
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|13807073|gb|AU181800.1|AU181800
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTG
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTG
EST: gi|218478169|gb|FG952614.1|FG952614
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAAAGCTTGGCCAC                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTAT-AAGATTTTCTTGT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAA-ATTTTCTTGT
EST: gi|33654864|gb|CF277478.1|CF277478
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACT
EST: gi|55434624|gb|CV730436.1|CV730436
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|5005525|gb|AU070290.1|AU070290
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|55432349|gb|CV729195.1|CV729195
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|5003992|gb|AU069141.1|AU069141
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|10931521|gb|AU161795.1|AU161795
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGNAAA-CGTATCAAATTT-CTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88574402|gb|CI666171.1|CI666171
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|5004323|gb|AU069472.1|AU069472
EST:     AAGAGTTTTGCTGCAATGGTACTGNTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTT-CTTGT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGT
EST: gi|33658926|gb|CF281539.1|CF281539
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88385731|gb|CI566593.1|CI566593
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTC-AGGACC-AGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88578450|gb|CI687383.1|CI687383
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGT
EST: gi|10931191|gb|AU161465.1|AU161465
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGNCCCAGAGCTTGGCCAG                         GT-ATTTCAATTTAAGGGTGATCAGAGGAAAAAGGT-TCAAA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATT-CAACTTCAGGGTGATCAGAGGAAAAACGTATCAAA
EST: gi|88371934|gb|CI681449.1|CI681449
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTA
EST: gi|33658505|gb|CF281118.1|CF281118
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCA
EST: gi|33659008|gb|CF281621.1|CF281621
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|33659352|gb|CF281965.1|CF281965
EST:     CAGAGTTTCGCTGCAATGGTACTGTTGTCCATGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|10930902|gb|AU161176.1|AU161176
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATC
EST: gi|5004268|gb|AU069417.1|AU069417
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGT
EST: gi|55438568|gb|CV732581.1|CV732581
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|218501665|gb|FG956181.1|FG956181
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|5003619|gb|AU068768.1|AU068768
EST:     AGAGTTTTGCTGCAATGGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTAAT-CAACTTCNGGGTGATCAGAGG
genomic: AGAGTTTTGCTGCAATGG-TACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGG
EST: gi|55439860|gb|CV733241.1|CV733241
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88453591|gb|CI681318.1|CI681318
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
EST: gi|88296327|gb|CI669103.1|CI669103
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCA
EST: gi|5004345|gb|AU069494.1|AU069494
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAG
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAG
EST: gi|88325376|gb|CI675174.1|CI675174
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGA
EST: gi|218489533|gb|FG952479.1|FG952479
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88397535|gb|CI684460.1|CI684460
EST:     AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGT
genomic: AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCC-AGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGT
EST: gi|33655482|gb|CF278096.1|CF278096
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGAT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGAT
EST: gi|88392264|gb|CI684109.1|CI684109
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTC
EST: gi|55432278|gb|CV729159.1|CV729159
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCANATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|33659492|gb|CF282105.1|CF282105
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTAT
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTAT
EST: gi|33659025|gb|CF281638.1|CF281638
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
EST: gi|33659283|gb|CF281896.1|CF281896
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|218486401|gb|FG954654.1|FG954654
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88314749|gb|CI608208.1|CI608208
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTT
EST: gi|55410876|gb|CV723252.1|CV723252
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|218482459|gb|FG952468.1|FG952468
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88425616|gb|CI569340.1|CI569340
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGAT-AGAGGAAAA-CGTCTCAAATTTT-TTGT-
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|55440331|gb|CV733475.1|CV733475
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88575978|gb|CI670123.1|CI670123
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|33679542|gb|CF307781.1|CF307781
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|218486314|gb|FG947937.1|FG947937
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATC
EST: gi|38565600|gb|CK085053.1|CK085053
EST:     AAGAGTTTTGCTGCAATGGTATTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAGAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|33658019|gb|CF280633.1|CF280633
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATC
EST: gi|33659753|gb|CF282366.1|CF282366
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTAATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAA
EST: gi|5004388|gb|AU069537.1|AU069537
EST:     AAGAGTTTTGCTGCAATGGGACTGTTGTCCANGACC-AGAGCTTGGGCAG                         GTCATTCAACTTCA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCA
EST: gi|33664638|gb|CF295605.1|CF295605
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTT
EST: gi|10930809|gb|AU161083.1|AU161083
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTA
EST: gi|11026483|gb|AU163084.1|AU163084
EST:     AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGGNCCCAGAGCTTGGCCAG                         GTCATTCAACTTCAAGGGTGATCAGNGGGAAAACGGTATCAAAATTTTCTT
genomic: AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGA-CCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCA-GGGTGATCAGAGGAAAAACG-TATCAAA-TTTTCTT
EST: gi|33658705|gb|CF281318.1|CF281318
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|5003721|gb|AU068870.1|AU068870
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGA
EST: gi|33654421|gb|CF277035.1|CF277035
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|1632623|gb|C20352.1|C20352
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGNTTNGCCAG                         GTCATTNA-CTTCAGGGTGATCAGAGGAAAA-CG-ATCAAATTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTT
EST: gi|55408730|gb|CV721106.1|CV721106
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAG
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAG
EST: gi|33659713|gb|CF282326.1|CF282326
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACCGTATCAAATTTTCTTG
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAAC-GTATCAAATTTTCTTG
EST: gi|27576503|gb|CA999197.1|CA999197
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTT
EST: gi|11233414|gb|AU164826.1|AU164826
EST:     AGAGTTTTGCTGCAATGGTACTGTTNGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGGAAAAAACGNATCAAATTTTCTTG
genomic: AGAGTTTTGCTGCAATGGTACTGTT-GTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGG-AAAAA-CGTATCAAATTTTCTTG
EST: gi|567988|gb|D38823.1|D38823
EST:     AGAGTTTTGCTGCAATGGTACTGTTNGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGGAAAAAACGNATCAAATTTTCTTG
genomic: AGAGTTTTGCTGCAATGGTACTGTT-GTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGG-AAAAA-CGTATCAAATTTTCTTG
EST: gi|88979298|gb|CI025800.1|CI025800
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTT
EST: gi|88360506|gb|CI608432.1|CI608432
EST:     AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAA
genomic: AGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCC-AGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAA
EST: gi|55440529|gb|CV733575.1|CV733575
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATT
EST: gi|88349176|gb|CI678149.1|CI678149
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATC
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATC
EST: gi|33658377|gb|CF280990.1|CF280990
EST:     AGAGTTTTGCTGCAATGGNTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGGTGATCAGAGGAAAAACGTATCAA
genomic: AGAGTTTTGCTGCAATGG-TACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGG-TGATCAGAGGAAAAACGTATCAA
EST: gi|88574842|gb|CI666611.1|CI666611
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTT
EST: gi|88440877|gb|CI693452.1|CI693452
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCA
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCA
EST: gi|10931162|gb|AU161436.1|AU161436
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGGCAG                         GTCATTCAACTT
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTT
EST: gi|88731374|gb|CI754987.1|CI754987
EST:     AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTCAGGGTGATCAGAGG
genomic: AAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGG
EST: gi|33809918|gb|CF330847.1|CF330847
EST:     AGAGTTTTGCTGCAATGGTACCTGTTGTCCAGGACCCAGAGCTTGGCCAG                         GTCATTCAACTTC
genomic: AGAGTTTTGCTGCAATGGTAC-TGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 1813

GGGATTGAAGAAGGAATTCAGCTACAACAAGATCCTCAAAGATCTCAAGAAAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaa ... cactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTTCAGGTAGGGATCATTCTTCTTGTGCATGCTTACTGCAATTAGATGTACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacgtttttctatctttctgagctagtttttctgatcaatgcttcactctgtagGTCATTCAACTTCAGGGTGATCAGAGGAAAAACGTATCAAATTTTCTTGTTCAGGTAGGGATCATTCTTCTTGTGCATGCTTACTGCAATTAGATGTACA
                              ttctgat  putative branch site (score: 1813)
                                          cttcactct  putative PPT
     tttttctat  TA-rich tract