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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC

Basic information

species Oryza sativa
transcript LOC_Os07g33880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
--gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctg-gatgtgttggatgctcacttgcataattgttctctg---cagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTA-CTGGATACTATAGTTGTTGGTCTAC
  | | | | ||||| ||  |  |     |||     ||  ||  ||  ||| | |  ||  ||| |     |  ||  | ||  | | |   || ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||     || | || |||  |  | | |    | |  
gtgcagtgtctcattttcctg--tgttaggcttgctgttg-cacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGA-TCGAACCTGTGG

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctct-gcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
                                           | ||  | | |   | | | | | |    |||  |||| || |   | | |  ||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||                                        
-----------------------------------------gtactccctgtgtccattggt-tatagatcactc-tttgcttactccctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAATGGCAAGGGCACGTCTCTTTTCTAA----------------------------------------

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTG-CTACCTACTGGATACTATAGTTGTTGGTCTAC
||| | | |   |         | | |  ||    | |  |  || ||||  |    ||| | |     |  ||    ||  |   |||      ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  | || | | ||||    | |  |  |||||  | | |  
gtactgtcttgattctcccgtgctaaacttgctgctga--acaaagcatttctccattggttatagctcactctttgctgactccctgtgtc--acagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCTTCTCGTCCACCTGTCTGGTTGTTGAGTTGAAGCTGTG-

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcata-attgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
      | | |  |||    | ||   | |     ||    |   || || |  |   |    || ||  ||||  | | | |   || ||  |||||||||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| |||||                                         
-----gtataagcgtctcttc-ccgtcgtttcgtttttgtttttgtcgttttgatcgcgtggctgatgcttgctttcctccttctgtttttgcctgcagAGGTGCAAGCATTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACCTCTCTGTTCTAG----------------------------------------

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaagactccag-agctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctc-tgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC---------------------------------
   ||| |  || || || |   ||   | | ||| |  |  |    |||     |||||  || | |    | |   |    |   |||| |  |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||  ||||    ||      | |   | |  |  ||   | |                                  
--gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtg-gctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaag--actccagagctgaaaattatcatgaatcattattttgctggatgtgttg--gatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
 || | || | |     ||  | |      ||||     |       |||||    |  || |   || |  ||||||  ||    |  || |  | |||||||||||||||| || ||||| ||||| ||||||||||| || ||||||||||| ||||| || |  |  ||     || |   |       |   | |||
-tacttttgcctcaaacagtaattttgccactgattcccaaacatgctcattgccgttttgaacacgtggttgatgcttgct-atgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGAATATTAGAATTTGCAATTTCACACACTCTCTGTAC

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
           ||   |       ||   || |   | |  ||  ||  | |  || ||    |  ||| || |   |  | |   | |  | |||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||  |||     ||     | ||   |   |||   |   |  
----------gttagtatatggaaagcaatggatgcttttttggttccatgtggtg-tgtggctaatggttgttagtt--cctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
            | |   ||    ||   || |   | |  ||  ||  | |  || ||    |  ||| || |   |  | |   | |  | |||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||  |||     ||     | ||   |   |||   |   |  
-----------gtatatggaa---agcaatggatgcttttttggttccatgtggtg-tgtggctaatggttgttagtt--cctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3
gtattatttcattgtcaagactccag-agctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctc-tgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
   ||| |  || || || |   ||   | | ||| |  |  |    |||     |||||  || | |    | |   |    |   |||| |  |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||  ||||    ||      | |   | |  |  ||   | | 
--gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtg-gctaatggtttgttcctgtctatgttgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAAT

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC--
            ||   |||    ||| | |   |||||   | ||   ||  ||| |  || || |  |   |   |||  |  |||||   | ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||| || |  | || |   | | ||  ||||     | |  
-----------gtgcatagaacatagatcagttcattataccggatttgtaacttggta-atttgctt-acattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGT--ACTTGCTG

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCT-TGCTACCTACTGGATACTATAGTTGTTGGTCTAC
             || | | || |     |    |   |  | ||||| | ||| |    | ||  ||  |  |    |   |   || | | |||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || ||| ||| | |   | |||     |  | |   | ||| |    
-------------gtaatgtctgcgacattctttacctttgttaatcactctttagtctca-gttctgtttcttacactttgtgtgtggtttttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG-

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 3
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatg-tgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACC--TACTGGATACTATAGTTGTTGGTCTAC
        ||| ||||  |||   |||        |  |  |      ||  ||||     ||   | |  |  | | |      ||||   | ||||||||||||||||||| |||||||| || || |||||||| ||||| || ||||| || || || | ||  |     |  |   | ||||| |   |    |  
-------gtcagtgtcttgaccatagattactttttccttcttttggtttgctttggcatttggcatagtttttttattattgccattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGATAAGAAGGGAAAGGGCACTTCTCTATTTTAGATGGATTATTCATGGTCTTTTTTGCTATACTATCTTCCTT--

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
-gtattatttcattgtcaag----actccagagctgaaaattatcatgaatcattattttgctggatgtg-ttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGC-----TTGCTACCTACTGGATACTATAGT-TGTTGGTCTAC
   |   | | |   |||||    |||       |      | |  ||   ||    ||   |  |      || ||  |   |     |||||   | ||||||||||||||||||| |||||||| || ||||||||||| |||||||| ||||| || ||    ||     | |  |  | |    | ||||| | |||||      
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG------

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 4
---------gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTG--CTACCTACTGGATACTATAGTTGTTGGTCTAC
         ||   || |  || | |||    || |  |  ||| | |  | ||| | | |||  |   ||     | |      |||   | ||||   | |||||||||||||||| || ||||| ||||| || |||||||| ||||| || ||||| || || |||||     |   | | || |   |  |  |     | |  
caaaaatttgtcaaatgtattttttaagttagcaaattttgaaactgtttttaataactgttt--ccaaat-----gaacctcagcttctgtcattggattttgcagAGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCTCTATTTTAGATTGCAAAACCAGGCAATTGCAGGGTCCATCTTCCATTTT--

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------------------------------------------------gtattatttcattgtcaagactccagagctgaaaattatcatg--aatcattattttgctggatgtgt---------tggatgctcacttgcataatt--gttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC------
                                                                                           ||| | || |   |     | | ||  |    || ||   |   ||||     |  || |    ||            |   ||     ||| | |  || |||||||| | |||||||| || |||||||| |||||||||||||| ||||| ||    || |||||     || |      | |||||    | | |  ||  ||        
gtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAGCTCTTCTAGGCAACTCG------ATTGGATTACCTCGCTTCTGAACTTTAGAGAG

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 4
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcatt---attttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
 |  | |  | |    ||| |  || ||      | | || |   | | |   |   | ||     |   ||   || ||   || | |  |  | ||||| | |||||||| ||||||||||| |||||||||||||||||||| ||    ||||| |||| | | ||           ||  || | |||| |      
-tggtttcgcgtgcggaagccctcatagtgttttagtctctttgcttacttgaacaatcctcaggcttcaggtgactaacactcaaagtgatattttgcagCGCTGCAAGCACTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACCCAACTTTTTTAAACTACATGTCTTAATTGAAATGTTAAAATTGTGGACTGGT

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------------------gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattt------tgctggatgtgttggatgctcacttgcataatt----gttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACT-ATAGTTGTTGGTCTAC
                                                                 |   | |||  |   ||||| ||   |   | | |   |  || ||   ||      | || | | |     |  || ||  |||   ||    ||  ||  ||| | |||||||| |||||||||||||||||||||||||| || ||||||   || || || ||    ||||      || || |  | |  |  ||    | 
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 4
----gtattatttcattgtcaagactccagagctgaaaattatcatg-aatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTA---CCTACTGGATACTATAGTTGTTGGTCTAC
     | |   |    ||| | | |||         ||    |     ||| || |     ||  || ||  ||   || |   | |  |||    ||||||| | |||||||||||||||||||| |||||||||||||||||||| ||    || |||||     |  |  |   || ||| ||  ||  ||| |||| |    
ctccttttctctggggtgttacgtctcatttctctcaagcggtttcacaatgatcaccc--ctcaatttgaagggc-ctaatacgtagtattaaattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGCATCACGTCAGGTCCAACTAGAGTCTGGAGT-GTTGATAA--

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
----gtattatttcattgtcaagactcca-gagctgaaaattatcatgaat--cattattttgctg-gatgtgttggatgctcacttgcataat-----tgttc-------tctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGC-TTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
     || |  || | | |     | | | ||| | || | |    || ||  ||||| |       ||||| |||  || ||| | |  |||      |||||       | | ||| | |||||||| |||||||| || ||||||||||||||||||||||||   || ||||| |  |  ||| ||     |      | |||     ||     
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgt-tgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ05955 (Selaginella moellendorffii), 3'ss of exon 4
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatg-tgttggatg-ctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTA-CTGGATACTATAGTTGTTGGTCTAC
                                          || |  |   |||||| |    || | |||| ||  |||||| |         | ||||||||||| || || || || ||||| ||||||||||||||||||||     | ||||||   ||  || |   |  |     || | |    || | | |
--------------------------------------gtgggatttttctctttgctcgtccctgatcgatggctttcttgcaaa---------tccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGC-GCGCGCGATTCAATTTTCCTCTCTTGGATATGATGTTC

upper sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ07113 (Selaginella moellendorffii), 3'ss of exon 4
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatg-tgttggatg-ctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAAT-TGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
                                          || |  |   |||||| |    || | |||| ||  |||||| |         | ||||||||||| || || || || ||||| ||||||||||||||||||||     | ||||||    ||  | | |    |   |    | | || || |||  
--------------------------------------gtgggatttttctctttgctcgtccctgatcgatggctttcttgcaaa---------tccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGCGCGCGCGATTCAATTTTCCTCTCTTGGATGATGTTCTC-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3768088|gb|AU032115.1|AU032115
EST:     TGAAGCTGCAATGCCAAAGCTGCAAN-ATTACTCCCAGCACCCCATCAAG                         AGGTGCAAGCATTTCGAGATTGGTGGGAGACAAGAAGGGCAAAGGGAACAT
genomic: TGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttc ... ttctctgcagAGGTGCAAGCATTTCGAGATTGGTGG-AGACAAGAAGGGCAA-GGGAACAT
EST: gi|58612968|gb|CK040680.1|CK040680
EST:     TGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAG                         AGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttc ... ttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 59 (upstream exon), 63 (downstream exon)
Score: 759

GCAAAAACCACCAAGAAGATCGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttc ... ttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC
                           tgctcac  putative branch site (score: 759)
                                          ttgttctct  putative PPT
                                      ataattgtt  TA-rich tract