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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttctttcgccttatacgctgtatcaattacaggatatgatgagatcaaattgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG

Basic information

species Oryza sativa
transcript LOC_Os07g32400.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g32400.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G027756_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------gttgttctttcgccttatacgctgtat---caattacaggatatgatgagatcaaattgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG
                                              | |   ||| | |  |  |  |||||    |     |   |  |     | | |||   ||  |   |  |  || | | | ||||||| ||| || ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || ||||| ||||| |||||||| || || ||| ||||||||||||||||||| ||||
gttgtggtttctccttgtgctctatattgtatgctaggctgtcatagatcaacttacccggtcgatactgtaggggcgtcccctacagttttcatggtaaaaaaaaacttacttggtcgatatgcaagttcctaa-aggctttatttcctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACGGCTCTTATCTTCACCAGACTAAATTGTGGATAGTAATGGAATACATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796927|gb|CF324327.1|CF324327
EST:     TGAGGATGACATTGAAGACATCCAAAAG                         GAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTAT
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgttcttt ... catgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG
          ataatttatttcctaa  TA-rich tract