Sequence
atgc intronic sequence ATGC exonic sequencegttgttctttcgccttatacgctgtatcaattacaggatatgatgagatcaaattgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG
Basic information
species | Oryza sativa |
transcript | LOC_Os07g32400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g32400.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G027756_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------gttgttctttcgccttatacgctgtat---caattacaggatatgatgagatcaaattgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG
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gttgtggtttctccttgtgctctatattgtatgctaggctgtcatagatcaacttacccggtcgatactgtaggggcgtcccctacagttttcatggtaaaaaaaaacttacttggtcgatatgcaagttcctaa-aggctttatttcctgttgcagGAGATATCTGTTTTGTCACAATGCCGGTGCCCATATATTACCGATTATTACGGCTCTTATCTTCACCAGACTAAATTGTGGATAGTAATGGAATACATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33796927|gb|CF324327.1|CF324327EST: TGAGGATGACATTGAAGACATCCAAAAG GAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTAT
genomic: TGAGGATGACATTGAAGACATCCAAAAGgttgttcttt ... catgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaatgtggataatttatttcctaattcctaataggattaatttcatgttgcagGAGATATCTGTTTTGTCACAATGCCGTTGTCCATATATAACTGACTATTATGGCTCATATCTTCATCAAACGAAACTGTGGATAGTAATGGAATATATGG
ataatttatttcctaa TA-rich tract