1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttccgttctgttgagatctccaaacatgactaaggagtagtacttcatttatttgttttgtttattacaaactattaacttctgttcatgcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGA
species | Oryza sativa |
transcript | LOC_Os07g29630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACANGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTG CAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAAEST: gi|33682993|gb|CF311232.1|CF311232
genomic: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGgtatgttctt ... gcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
EST: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTG CAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAAEST: gi|33683745|gb|CF311984.1|CF311984
genomic: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGgtatgttctt ... gcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
EST: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTG CAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAAEST: gi|58587083|gb|CF985391.1|CF985391
genomic: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGgtatgttctt ... gcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
EST: AGGGAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTG CAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAAEST: gi|86495728|gb|CI138361.1|CI138361
genomic: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGgtatgttctt ... gcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
EST: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTG CAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
genomic: AAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGgtatgttctt ... gcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAA
tcatttatttgttttgtttattacaaactattaacttctgttcatgcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGA
tattaac putative branch site (score: 21)
tatttgttttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccgttctgttgagatctccaaacatgactaaggagtagtacttcatttatttgttttgtttattacaaactattaacttctgttcatgcaatttcagCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - ctgttga
- - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaact