1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaggcaaactacatagcaatgaactatatggaaaactgcctttttaatttctctttcataaagtaagctccttaaacttttctttccatcatgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACTGGGGAATCGTATGCTGGACACTATATTCCTGCCTTTGCAAGTCGAGTGT
species | Oryza sativa |
transcript | LOC_Os07g29620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCGTCACGATGAAGCGGGTGTTAGCAACGACCTGTATGCCTTTCTTCAG GCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACTEST: gi|29639499|gb|CB644508.1|CB644508
genomic: CCCGTCACGATGAAGCTGGTGTTAGCAACGACCTGTATGCCTTTCTTCAGgtaggaactc ... atgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACT
EST: CCCGTCACGATGAAGCTGGTGTTAGCAACGACCTGTATGCCTTTCTTCAG GCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACTEST: gi|58686510|gb|CK075197.1|CK075197
genomic: CCCGTCACGATGAAGCTGGTGTTAGCAACGACCTGTATGCCTTTCTTCAGgtaggaactc ... atgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACT
EST: CCCGTCACGATGAAGCTGGTGTTAGCAACGACCTGTATGCCTTTCTTCAG GCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACT
genomic: CCCGTCACGATGAAGCTGGTGTTAGCAACGACCTGTATGCCTTTCTTCAGgtaggaactc ... atgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACT
aatttctctttcataaagtaagctccttaaacttttctttccatcatgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACTGGGGAATCGTATGCTGGACACTATATTCCTGCCTTTGCAAGTCGAGTGT
ttttaat putative branch site (score: 45)
cttttctttccatcat putative PPT
ttaaacttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggcaaactacatagcaatgaactatatggaaaactgcctttttaatttctctttcataaagtaagctccttaaacttttctttccatcatgttgacagGCCTTCTTCACTGAGCACCCGAATTTTGCTAAAAATGATTTCTATATTACTGGGGAATCGTATGCTGGACACTATATTCCTGCCTTTGCAAGTCGAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - aactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctcct