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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attaattggcctctaaaaaggctctaataatattgatgtgcacaccacattgcgcggccatgtcaaagcttctgaataacaaaacgaaatctgcaagcagGAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGATAATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAG

Basic information

species Oryza sativa
transcript LOC_Os07g26720.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26720.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G148056_T01 (Zea mays), 3'ss of exon 3
attaattggcctctaaaaaggctctaataatattgatgtgcacaccacattgc-gcggccatgtcaaagcttctga-ataacaaaacgaaatctg--caagcagGAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGATAATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAG
  |||||  ||  ||     |||   ||   |        | | | ||    | |  | |  | |  | | ||||| | | |          |     |||||||| || ||  ||||||||| |||||| |||||||| ||||| ||||||||||||||||| || |||| |||
-gtaattaaccatta-----gcttcgatggcacctgcagcctctcaactcaactgttgtcgcg-cgtaacatctgatacagcctgcttccgccctactaagcagGAGTCTTCGAAGCTGAAGCGGATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattgcgcggccatgtcaaagcttctgaataacaaaacgaaatctgcaagcagGAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGATAATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAG
                            gaataac  putative branch site (score: 2)
                             aataacaaaa  TA-rich tract