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...cctgacttctgacaagtctatatgtagtttgagcaatgtgatttggtccttcaatttttctttttgcaagtattgcttattaaaaagtgataattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG
species | Oryza sativa |
transcript | LOC_Os07g26610.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTEST: gi|88356963|gb|CI620851.1|CI620851
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTEST: gi|88365076|gb|CI616495.1|CI616495
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGEST: gi|88298983|gb|CI567986.1|CI567986
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAG
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTEST: gi|88392307|gb|CI612781.1|CI612781
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGGAGGGCATGATGTTTTACAATTTEST: gi|88364874|gb|CI614492.1|CI614492
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTEST: gi|88399621|gb|CI583355.1|CI583355
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGAEST: gi|88736243|gb|CI759751.1|CI759751
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGA
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTAEST: gi|33793170|gb|CF322466.1|CF322466
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTA
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTEST: gi|88362534|gb|CI623874.1|CI623874
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGEST: gi|88298548|gb|CI563543.1|CI563543
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATG
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTEST: gi|29660678|gb|CB656953.1|CB656953
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
EST: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAG GATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
genomic: TAAGAATTTCTGTTGGACATGATTCTCGAATTTCTGCACATAAATTGCAGgtggctcctg ... taattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTT
gtccttcaatttttctttttgcaagtattgcttattaaaaagtgataattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG
ttattaaaaagtgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgacttctgacaagtctatatgtagtttgagcaatgtgatttggtccttcaatttttctttttgcaagtattgcttattaaaaagtgataattgtcagGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
cctgact
- - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat