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...tggggtttataacaattttagttaaagctaaagagtttcttgtgctgcatccatgatgtgttattaatcaatttgctttactctcttctatttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTCACTGAGCCTGTTACTGAAGCAATAGCTTCTGCATTTGCTGCATGGTTA
species | Oryza sativa |
transcript | LOC_Os07g26610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTEST: gi|58661803|gb|CK050483.1|CK050483
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCT
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTEST: gi|88355792|gb|CI626233.1|CI626233
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCT
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTEST: gi|88372673|gb|CI612601.1|CI612601
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCT
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGT-GCTGTTGGTGGGGEST: gi|33678513|gb|CF306752.1|CF306752
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGG
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTEST: gi|33381367|gb|CF196710.1|CF196710
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCT
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTEST: gi|88300211|gb|CI582445.1|CI582445
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCT
EST: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAG TGATATTCGTGGTGTTGCTG
genomic: GTTGTCCCATCCTCTGCGAAAGTTGACTTTTTAAAGCTCCAGAATGGCAGgtataacaat ... tttctcacagTGATATTCGTGGTGTTGCTG
tgcatccatgatgtgttattaatcaatttgctttactctcttctatttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTCACTGAGCCTGTTACTGAAGCAATAGCTTCTGCATTTGCTGCATGGTTA
tattaat putative branch site (score: 10)
tttgctttactctctt putative PPT
tgttattaatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggggtttataacaattttagttaaagctaaagagtttcttgtgctgcatccatgatgtgttattaatcaatttgctttactctcttctatttctcacagTGATATTCGTGGTGTTGCTGTTGGTGGGGTCGAAGGCGAGCCCGTAAATCTCACTGAGCCTGTTACTGAAGCAATAGCTTCTGCATTTGCTGCATGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC