1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatgaacacttgcatgataaataattcaagggcttgttgtaatggttgttttatgtttttttttctgtcatgtgattctaaatcattctgttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTTCTAAGGCTGTTAGTTCAGAACAGAATTGCAGAGTTCCACACTGAGCTG
species | Oryza sativa |
transcript | LOC_Os07g25420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTTGAAAGGGACTTTTGTCAACTCAAACCCTTATTACATGGATACATG CGGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTNGGTCTTAATCEST: gi|88412237|gb|CI573513.1|CI573513
genomic: CATTTGAAAGGGACTTTTGTCAACTCAAACC-TTATTACATGGATACATGgttagttcct ... ttttatgaagCGG-CATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATC
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGEST: gi|33658971|gb|CF281584.1|CF281584
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGG
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|3768363|gb|AU032390.1|AU032390
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88333830|gb|CI643862.1|CI643862
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGEST: gi|88424460|gb|CI608046.1|CI608046
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAG
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88328055|gb|CI649853.1|CI649853
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCCAC-ACAGGAGTATCCAATCTTGGGTCTTAATCEST: gi|58681161|gb|CK069848.1|CK069848
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATC-ACCACAGGAGTATCCAATCTTGGGTCTTAATC
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88364221|gb|CI612170.1|CI612170
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAAC-TTATTACATGGATACATG CGGCATAATTC-ACCATCACCACAGGAGTATC-AATCTTGGGTCTTAATCTEST: gi|88345880|gb|CI632353.1|CI632353
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATEST: gi|88358913|gb|CI619417.1|CI619417
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAAT
EST: GCATTTGAAAGGGAATTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|2427780|gb|C72243.1|C72243
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGG-CTTTTGTCAACTNAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGGGTATCCAATCTTGGGTCTTAATCTEST: gi|88395474|gb|CI612996.1|CI612996
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88377414|gb|CI602899.1|CI602899
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: CATTTGAAAGTGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAEST: gi|88391840|gb|CI603359.1|CI603359
genomic: CATTTGAAAG-GGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGA
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCAGCACAGGAGTATCCAATCTTGGEST: gi|88726404|gb|CI750059.1|CI750059
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGG
EST: CATTTGAAAGGGACTTTTGTCAACTCAAACCCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|33692357|gb|CF320596.1|CF320596
genomic: CATTTGAAAGGGACTTTTGTCAACTCAAACC-TTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCCTGGGTCTTAATCTEST: gi|33654136|gb|CF276750.1|CF276750
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88305511|gb|CI630673.1|CI630673
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATEST: gi|218496609|gb|FG945909.1|FG945909
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAAT
EST: GCATTTGAAAGGGACTTCTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCGCAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88393359|gb|CI618247.1|CI618247
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: CATTTGAAAGGGACTTTTGTCAACCTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88305623|gb|CI631990.1|CI631990
genomic: CATTTGAAAGGGACTTTTGTCAAC-TCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATCTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTAEST: gi|58586987|gb|CF985295.1|CF985295
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTA
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88392419|gb|CI612893.1|CI612893
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|218495940|gb|FG948496.1|FG948496
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTCTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCGCAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|218498577|gb|FG966054.1|FG966054
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTAGAAAGGGACTTCTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCGCAGGAGTATCCAATCTTGGGTCTTAATCTEST: gi|88326392|gb|CI659822.1|CI659822
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAEST: gi|88383951|gb|CI631841.1|CI631841
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACA
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCEST: gi|2443022|gb|C74793.1|C74793
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCC
EST: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATG CGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
genomic: GCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcct ... ttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCT
ttgttttatgtttttttttctgtcatgtgattctaaatcattctgttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTTCTAAGGCTGTTAGTTCAGAACAGAATTGCAGAGTTCCACACTGAGCTG
ttctaaa putative branch site (score: 2)
ttctgtttt putative PPT
ttatgtttttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgaacacttgcatgataaataattcaagggcttgttgtaatggttgttttatgtttttttttctgtcatgtgattctaaatcattctgttttatgaagCGGCATAATTCCACCATCACCACAGGAGTATCCAATCTTGGGTCTTAATCTTCTAAGGCTGTTAGTTCAGAACAGAATTGCAGAGTTCCACACTGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-atgaaca
- - - - - tgcatga
- - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg