Sequence
atgc intronic sequence ATGC exonic sequence...gtttctatcttgattgattttatgtgttcttaatattatgcttctatgtgtcaatctactcaatgtagtaccagataacatgcttgtgaattttttgcagGTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAACTAGCAGTGAACAGTCTTCAACCTGAGGCTACCAGTGAAATCACTTTGA
Basic information
species | Oryza sativa |
transcript | LOC_Os07g22640.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g22640.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G092129_T02 (Zea mays), 3'ss of exon 9
---gtttctatcttgattgattttatgtgttcttaatattatgcttctatgtgtcaatctactcaatgtagtaccagataacatgcttgtga-attttttgcagGTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAACTAGCAGTGAACAGTCTTCAACCTGAGGCTACCAGTGAAATCACTTTGA
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gacatcctcgtataaat--acttaatgt-ttgacactgctccaatacgagataccaattaacctggcttgttttgttgtga-atatttgtggtggacttcacagGTTTACGACGAAGACAAACTTCAGCAAGACAAGAGACTAGGTGTGGCAAAACTAGCAGTAAACACTCTTGAATCTGAGATTACCCAAGACGCCACTCTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29689584|gb|CB685859.1|CB685859EST: CATTCCCTCTGATTGTTGAAGACAAAGAAACCCAGTCTGTCATTTTTGAG GTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAA
genomic: CATTCCCTCTGATTGTTGAAGACAAAGAAACCCAGTCTGTCATTTTTGAGgtaattcttc ... ttttttgcagGTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgtcaatctactcaatgtagtaccagataacatgcttgtgaattttttgcagGTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAACTAGCAGTGAACAGTCTTCAACCTGAGGCTACCAGTGAAATCACTTTGA
agataac putative branch site (score: 3)
ttttttgc putative PPT
tgaatttttt TA-rich tract