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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacttcgagcgtacatattttgtcattccccatctggatgtcaactttacttagtctcatagcttgtctttcactctttccttcattgtgtagGAATTTTGGCCCAAGTTACTTGTGCACAAGATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCGACTGAAAGTGAG

Basic information

species Oryza sativa
transcript LOC_Os07g17040.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17040.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G461793_T01 (Zea mays), 3'ss of exon 3
gtatgcacttcgagcgtacatattttgtcattccccatctggatgtcaactttacttagtctcatagcttgtctttcactctttccttcattgtgtagGAATTTTGGCCCAAGTTACTTGTGCACAAGATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCGACTGAAAGTGAG
|||||||  || |||  || |||  |||   |||  |     |  |  |   || || |||| ||      | |||     |||   |||||    ||||||||||||| ||| |||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||
gtatgcatctctagctaacgtatactgtttctcctta-----aaatttagagtatttggtctaatt-----ttttttggcttttttgtcatta---agGAATTTTGGCCTAAGCTACTTGTGCACAAGATCAAACAGCGGCTGACAAAAATGACTCAATATCGTATAAGAATGAGGAAACTTCAACTGAAAGTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaactttacttagtctcatagcttgtctttcactctttccttcattgtgtagGAATTTTGGCCCAAGTTACTTGTGCACAAGATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCGACTGAAAGTGAG
                        cttgtctttcactctt  CT-rich tract
       tttactta  TA-rich tract