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...gcaaatatttataggaaattctttttagattgtgtgatgattaatttcaccctacttcctttctagttactgacatattgtgaaatgctattttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTACCAAGTACTTATCATTCAAAGCTGTTGATGGAAGCTATGTCTTCAATA
species | Oryza sativa |
transcript | LOC_Os07g16970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTEST: gi|88408099|gb|CI601577.1|CI601577
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTT
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTEST: gi|29616692|gb|CB621704.1|CB621704
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTT
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTEST: gi|88407824|gb|CI588853.1|CI588853
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTT
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTEST: gi|58692091|gb|CK080778.1|CK080778
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTT
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGEST: gi|58655667|gb|CK044347.1|CK044347
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTG
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTEST: gi|88407852|gb|CI588881.1|CI588881
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTT
EST: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAG TTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACA
genomic: CGGCGCAAATTGGGGCTAGCAGAGACTACAATGTAGACATGATTCCAAAGgtcaggcccg ... ttttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACA
ttcaccctacttcctttctagttactgacatattgtgaaatgctattttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTACCAAGTACTTATCATTCAAAGCTGTTGATGGAAGCTATGTCTTCAATA
tactgac putative branch site (score: 11)
ttttgtct putative PPT
tattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaatatttataggaaattctttttagattgtgtgatgattaatttcaccctacttcctttctagttactgacatattgtgaaatgctattttgtctagTTTATGATGGCAAATGGTACATTGGTCCGTGTACTTATCCACACTGGTGTTACCAAGTACTTATCATTCAAAGCTGTTGATGGAAGCTATGTCTTCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - ataggaaa
- - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgct