1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtcaagcagcgttttgggagcttttttgtttgtattacaagacacattcttcttctatgttgatttcttagtatttggtttccttcatcttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTT
species | Oryza sativa |
transcript | LOC_Os07g14580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|117230076|gb|CT853782.1|CT853782
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|33657056|gb|CF279670.1|CF279670
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|88358340|gb|CI606849.1|CI606849
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GAATGCGCAGCCCAGGTTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|58597046|gb|CK007574.1|CK007574
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|58690454|gb|CK079141.1|CK079141
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG AT-ATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCEST: gi|66923810|gb|CX110658.1|CX110658
genomic: GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
EST: GCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG ATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
genomic: GCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgca ... ttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTC
cattcttcttctatgttgatttcttagtatttggtttccttcatcttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTT
tgttgat putative branch site (score: 13)
tttccttcatcttatc putative PPT
atttcttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaagcagcgttttgggagcttttttgtttgtattacaagacacattcttcttctatgttgatttcttagtatttggtttccttcatcttatcaacagATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - aagcagc
- - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatc