Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA

Basic information

species Oryza sativa
transcript LOC_Os07g14150.6
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
gtctgcacccgtcaattttc-cta--cgcataacctcatcacaaatatctgacgatttt-----atttaacacaactgctaattcttc--actacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
||  | ||    |  || |  ||    || |||  | || |   ||| |||  | || |      ||    | |  |||  | || ||   | |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 4
gtctgcacccgtcaatttt-----cctacgcataacctcatcacaaata--tctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
||    |     |  ||||     ||||  ||  |  |   ||||  ||    | ||    || | |||||   || |   | || || | ||||||||||| ||||| |||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
gttcataatttactgttttgattgcctaaaca-gatataggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGACGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G008216_T04 (Zea mays), 3'ss of exon 2
gtctgcacccgtcaattttc-cta--cgcataacctcatcacaaatatctgacgatttt-----atttaacacaactgctaattcttc--actacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA----------------------------------------------------------------
||  | ||    |  || |  ||    || |||  | || |   ||| |||  | || |      ||    | |  |||  | || ||   | |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                                                                
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagaggctggtttatggggccaaggcagaggctgccatcgccattggatttgatgacttcattgcagATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCAACTTGGAGATCAAGAAAGCTGACGGCAATGGTGCATTGATCGCTGAGCAAGTCTTTGAAAAGAC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 4
--------gtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgac-----gattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
         |||  |    |  | |     |    |||  | ||   | |   || ||     |      |||   ||||     | ||  |   || ||||| |||| |||||||| |||||||| || || ||||| |||||||| |||||||||||| |||||||  || |||||||||| || |||||||| ||  
atttaaaaatctttaaagatagagtacatgaaaattaaatttattttacaatgcttactctcgggcacactttcttacaatattcactttatttatatagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCAC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 8
--------gtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgac-----gattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
         |||  |    |  | |     |    |||  ||||   | |   || ||     |      |||   ||||     | ||  |   || ||||| |||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||||| |||||||  || |||||||||| || |||| ||| ||  
atttaaaaatctttaaagatagagtacatgaaaattaaattcattttacaatgcttactctcgggcacattttcttacaatattcactttatttatatagAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCAC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA09G12900.1 (Glycine max), 3'ss of exon 2
-----------gtctgcacccgtcaattttcctac------gcataacctcatcacaaatatctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
            |    |    | ||| || |  |      | || |  | |  |  | ||  |   |      |||   |||| |  ||| | |    |||||||| |||| |||||||| |||||||| || || ||||| ||| | || |||||||||||| |||||||  || |||| ||||  || || ||||||||  
atttaagataatttctaattaattaatattacatcaaaattgaattattttacaatgattacttttgggcacacttttttacaa-tattaaattt---atacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTAGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGCATTCTATCAGAAGGCAC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 4
------gtctgcacccgtcaattttcctacgcataac-ctcatcacaaatatctgacgattttatttaacaca----actgctaattc--ttcact----acagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
       |||||  | | ||   |    |    |  | |||| ||||  | |||   |  |||||| ||   |    | || | ||||  |||||     |||||| ||||| || ||||| || ||||||||||| || || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||| ||||||||  
gtgagcctctgccacagccacactattcatattttcctctcaccacatgtttctctagtatttattaaaatgatcacattgttcattcctttcacatcaaacagAGACTGGTTTACGGAGCTAAAGCAGAAGCTGCAATAGCAATTGGATTTGATGATTTCATTGCCGATGCACTGAGGGGCACTGGTTTTTATCAGAAGGCTC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 4
gtctgcacccgtcaattttcctacgcataacctc-atcacaaatatctgacgattttatttaacacaactgctaattcttcact--acagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
||  | |    |   | | |||| |  |  | |  ||  ||  | | |   | || ||  ||||  |     | ||||||      ||||||| |||| |||||||| ||||| || || || ||||| ||||| |||||||| |||||||||||||| ||| |||| ||||| || || ||||| || |
gttagaatggcttgttatccctatgtgtctcttttataccatgtttatcctgtttctagctaacttattacattattctttttctaacagAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAA

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA09G09430.2 (Glycine max), 3'ss of exon 3
-----------gtctgcacccgtcaattttcctac------gcataacctcatcacaaatatctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
            |    |    | ||| || |  |      | || |  | |  |  | ||  |   |      |||   |||| |  ||| | |    |||||||| |||| |||||||| |||||||| || || ||||| ||||| || |||||||||||| |||||||  || |||| ||||| || || ||||||||  
atttaagataatttctaattaattaatattacatcaaaattgaattattttacaatgattacttttgggcacgctttcttacaa-tattaaattt---atacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGGATTCTATCAGAAGGCAC

upper sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
lower sequence: AT5G28050.2 (Arabidopsis thaliana), 3'ss of exon 5
gtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgacgattttatttaacacaac---tgctaat-tcttcact-----acagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
||  |    ||  ||     |||| || || | ||||     | ||| |  |||| ||||| |||||    | || || |||  |||     ||||||| |||| ||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||| |||||||||| ||| ||||||||||  | |
gtaagatgtcga-aacaagtctactcacaaacccatc-----tttctaatcatttcatttatcacaatgagtactcatgtctctacttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGATGCTTTGAGAGGCACGGGGGTTTACCAGAAATCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33680087|gb|CF308326.1|CF308326
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33670642|gb|CF298881.1|CF298881
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88256256|gb|CI358644.1|CI358644
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88519999|gb|CI447653.1|CI447653
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33682073|gb|CF310312.1|CF310312
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88277065|gb|CI397867.1|CI397867
EST:     TGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCANAAGCTGCCATTGCCATTGGATTTGAT
genomic: TGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33683866|gb|CF312105.1|CF312105
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33679656|gb|CF307895.1|CF307895
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33681982|gb|CF310221.1|CF310221
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33688629|gb|CF316868.1|CF316868
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATCTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33680863|gb|CF309102.1|CF309102
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|86527578|gb|CI167784.1|CI167784
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88831118|gb|CI080542.1|CI080542
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33671795|gb|CF300034.1|CF300034
EST:     ATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: ATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33685711|gb|CF313950.1|CF313950
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88482667|gb|CI419938.1|CI419938
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33692465|gb|CF320704.1|CF320704
EST:     GTGAGCCATGCCCGATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33801266|gb|CF326506.1|CF326506
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33681656|gb|CF309895.1|CF309895
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33674876|gb|CF303115.1|CF303115
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33680845|gb|CF309084.1|CF309084
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33681144|gb|CF309383.1|CF309383
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33683237|gb|CF311476.1|CF311476
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGACTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33683641|gb|CF311880.1|CF311880
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33685141|gb|CF313380.1|CF313380
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|55413800|gb|CV726176.1|CV726176
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33680984|gb|CF309223.1|CF309223
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88984279|gb|CI020194.1|CI020194
EST:     GAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33820667|gb|CF336143.1|CF336143
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33683216|gb|CF311455.1|CF311455
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33683215|gb|CF311454.1|CF311454
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88473090|gb|CI410361.1|CI410361
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|86835661|gb|CI348118.1|CI348118
EST:     GTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88436018|gb|CI516554.1|CI516554
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|55414911|gb|CV727287.1|CV727287
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33680622|gb|CF308861.1|CF308861
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33654856|gb|CF277470.1|CF277470
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33684398|gb|CF312637.1|CF312637
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33653433|gb|CF276047.1|CF276047
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33681049|gb|CF309288.1|CF309288
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|16578126|gb|BI812221.1|BI812221
EST:     TGAGCCATGCCCAATGTGCTTTGGTCCACGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTCGCCATTGCCATTGGATTTGA
genomic: TGAGCCATGCCCAATGTGCTTTGGTGCA-GTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCT-GCCATTGCCATTGGATTTGA
EST: gi|33685446|gb|CF313685.1|CF313685
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88479810|gb|CI417081.1|CI417081
EST:     CAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: CAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33684612|gb|CF312851.1|CF312851
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33682472|gb|CF310711.1|CF310711
EST:     ATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: ATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|15852831|gb|BI805627.1|BI805627
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|88257031|gb|CI359419.1|CI359419
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|86825117|gb|CI358262.1|CI358262
EST:     GTGAGCCATGCCCAATGTGCTTT-GTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATT-GATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
EST: gi|33794731|gb|CF323245.1|CF323245
EST:     GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAG                         AGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT
genomic: GTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 65 (downstream exon)
Score: 39

CAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcaccc ... ttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcacaaatatctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA
                                    tgctaat  putative branch site (score: 39)
                                          ttcttcact  CT-rich tract
                   attttatttaacacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgacgattttatttaacacaactgctaattcttcactacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG