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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA

Basic information

species Oryza sativa
transcript LOC_Os07g14150.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G008216_T04 (Zea mays), 3'ss of exon 1
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
          | | ||| |||        | | |  || ||| || | || | |  |||      || |  ||  | | ||| |   | |     ||| |   ||  |||| | |   | |       |||  ||  |||  |  ||| |||||||||||||||| || ||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
---------gtaaattacctgaaggctaccattag-cagttgctc-taaggaaaattgtcattactttgatctcgttc-tgtaatcttcctggcagttaattccattatttgctgtgtggtttgatggttgatgta-tgtccatattttagGCTTGCAAAAAGCTTGGGAAAATTGAGCTCTCAGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactc-acattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
      |   |||  |    |  ||   | | |     ||  ||  | | | |||    ||   |||   |  |||  |   |     | | |  ||| |   ||  ||||   ||||  | ||  |   | ||  | ||   |  ||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
-----gtaaattacctgaaggctaccattagcagtc--ttacttagtaaaattat---cattactttaatctctttttgcaatctgtctagca--gttaatttcattattt---gatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttac-cacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                |  | || | |||    |    |   |  | | ||  ||||  | || || |   ||| ||||||      |   ||||  || |  ||   |   || |  |||||||  |||||||     |||| || ||  | || |||||||| || || ||||| ||||| || |||||||||||||||||| ||||||| ||  | |
--------------------------------------------tgaaaccacatttatatttcctaaaccacatcacttattctactt--atttcttaatatacatcatttt------gtacctcatgttataatttgatatcatctatagGCTTGTCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G17790.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgaga-atatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                ||||| |   |  ||||   || |||| ||   |||     || |   ||||| |     || | | | |      | | ||  | |   | |||    ||  ||   |    ||| ||||||||||| |||||     | || || ||  | ||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
--------------------------------aaatc-tcgctgtatgactcatgtgtgcattatttt----tttatagatgttata-----aactttatgc------agtgtcaaaaaatgattcatgcagtgttttcat----tttacagGCTTGCAAGAAGCTTAAGCAGATAGAACTTGCTGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 7
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||  ||| |     | || ||   |||  || || || |    ||||     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| |||||  |  
---------------------------------------ttgaacattac----tctgcatttttttcagctttatgtgcagcaaac-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttgcagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G09430.6 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                          | ||| |   |   | | | | | |     ||| | |||  |     | ||   ||||    |  | |   |||||  || |   |   ||  |   || | ||| ||||||||  |||||||     | || || || ||||| |||||||| || || |||||||| || ||||||||||||||||| ||| | || ||||| ||  
------------------------------------------tacattactctgcatttcttcttcttcaaattt-gtgtgcaa-----caaacaatttatgcaattaatg--ggatatgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCAATGTGCTTTGGAGCAATCCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatat-gtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                ||   || || |  |  | |  ||||| |   |  || |  |   |   ||||        |      | |   | |||    ||  ||   || ||    |||||||| || |||||     | || || ||  ||||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
------------------------------------------------agctcattgtatgactctgtatgccttcttttttctagatataataaactttatgcagtgttaaataaaaaatgattcatgcagtgttttcatttaa----cagGCTTGTAAGAAGCTTAAGCAGATAGAACTTGCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||| ||| |     | || ||   |||  || || || |    || |     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| ||||| ||  
---------------------------------------ttgtacattac----tctgcatttttttcagctttatgtgcagcaacc-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G28050.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatc-cgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                              | |||| | | ||||  || |||   || |||      |||| | |        |  |  |  ||||| |||    | |   ||   | || ||   ||| | ||||| || || || ||    ||||||||| | ||||| || || |||||||| |||||||||||||| || |||||||| || ||  | ||||||||  |  
---------------------------------------------gtaagaaaa-gagtattacgcttgaatctcttg------aaacgttg-------caaaaaccggttttctgatgatgatttgaatc--cattgtg---aatgtgcagGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGAC

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0030g01610.t01 (Vitis vinifera), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaactt-cgaattgtttaccacaccattttcggatagctactcacattgtcgttctg--ttaaattttc----agGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                           |   | ||| ||   |||  ||  |||  | | | |  || ||  | |  ||    ||||     |     |   | |  |  | |||  |||    |||| || || ||||||    |||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||  | ||||| ||  | |
----------------------------------------------------------aactagattgtgctcattgaatgacaaatctgcaagtgattcacttctcttttcagtgatactctttgtttctcatgcttggaatgaaaccttcctgcagGCATGTAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88326542|gb|CI644645.1|CI644645
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATT
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATT
EST: gi|33684397|gb|CF312636.1|CF312636
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88376916|gb|CI639241.1|CI639241
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33684446|gb|CF312685.1|CF312685
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33670472|gb|CF298711.1|CF298711
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88348203|gb|CI637664.1|CI637664
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTC
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTC
EST: gi|33681325|gb|CF309564.1|CF309564
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680862|gb|CF309101.1|CF309101
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|55413799|gb|CV726175.1|CV726175
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88576116|gb|CI670261.1|CI670261
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88324909|gb|CI644920.1|CI644920
EST:     TGAAGCATACTGATCCAACTGGACATGCTGAAGTGACTGGAATAAGAGAG                         GCTTGCAAAAAGCTC
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTC
EST: gi|33682363|gb|CF310602.1|CF310602
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88328922|gb|CI647002.1|CI647002
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTC
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTC
EST: gi|33670643|gb|CF298882.1|CF298882
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33820665|gb|CF336142.1|CF336142
EST:     GAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGC
genomic: GAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGA-GAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGC
EST: gi|33679899|gb|CF308138.1|CF308138
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88575933|gb|CI670078.1|CI670078
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCCTCTCAGATTGTGAAATTTACGC
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGC-TCTCAGATTGTGAAATTTACGC
EST: gi|33683865|gb|CF312104.1|CF312104
EST:     GAAGCATACTGATCCAACTGCACANTGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GAAGCATACTGATCCAACTGCACA-TGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88327608|gb|CI646801.1|CI646801
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGA
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGA
EST: gi|33654855|gb|CF277469.1|CF277469
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|58592974|gb|CF991282.1|CF991282
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCCATAAGAGAG                         GCTTGCAAAAGGCTCGGAAACATCGAGCTCTCAGATCGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88334769|gb|CI647151.1|CI647151
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTG
EST: gi|33680734|gb|CF308973.1|CF308973
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88337228|gb|CI628314.1|CI628314
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAA
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                        tactcac  putative branch site (score: 1)
                                                ttttc  putative PPT
                                      ttctgttaaatttt  TA-rich tract