Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG

Basic information

species Oryza sativa
transcript LOC_Os07g12650.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G132929_T03 (Zea mays), 3'ss of exon 2
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaata-tcacaacaaacgttgt-ttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
|  || |   | |  ||| |    ||| |  |     |  |||    |    | |  |  |  | | |  | | | || ||  ||||| | |  |  || ||||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||
ttgctgagcatgacattcttcactttgct--ttgtacttggcactaattgcatttcaacgttatgtaaagtgagattaatcttaacaaccttcatactgtagCTTTGCAAGATCGACTCTGAGGGCAAGGCGAGGAAGGTTGTAGGCTGCTCCTGTGTTGTTGTCAAG

upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G132929_T01 (Zea mays), 3'ss of exon 1
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaata-tcacaacaaacgttgt-ttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG----------------------------------
|  || |   | |  ||| |    ||| |  |     |  |||    |    | |  |  |  | | |  | | | || ||  ||||| | |  |  || ||||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||                                  
ttgctgagcatgacattcttcactttgct--ttgtacttggcactaattgcatttcaacgttatgtaaagtgagattaatcttaacaaccttcatactgtagCTTTGCAAGATCGACTCTGAGGGCAAGGCGAGGAAGGTTGTAGGCTGCTCCTGTGTTGTTGTCAAGGTGAGTATATCATTTCCTACGGTACTACTACAAG

upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G32060.1 (Arabidopsis thaliana), 3'ss of exon 3
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
    ||| || |  |    |||| |  ||||            |||||||| |  | |   |||      |||| | || |     ||  ||| |||||||||||||||||||||||||||||||| || |||||||| || || ||||| ||  ||||  |||||
---gtaagttgtcttccttttttatccttgaagc-------tttctctcctctaaggaagactttgatggtaacta-ataatcttcaat-ttggttgcagCTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG

upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G15930.2 (Arabidopsis thaliana), 3'ss of exon 3
---------tatctaaat-tttaatttcattttgttgttgatatcgttctg-----catctctcctttctgcatatcttctgatttaacaatatcacaacaaacgtt----gtt--tgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
         | | |   | ||||||      |  |  |  ||| | |  ||     ||  |   | | ||  ||   |  |   ||| ||||  || |   ||  ||    |||  ||||||| |||||||||||||||||||| || || |||||||| || || ||||| ||  | |||||||||
gtaagtctatgttttcctctttaatactgactcttcatatataccttattgtcgctcagtttatcctcctaaatgaatgtttggttatcaatggcaaattgaatctttgatgttgttgcagCTCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAG

upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ26130 (Selaginella moellendorffii), 3'ss of exon 2
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
                                     |  || || ||  |   |    |  ||||   | ||   | || |    | |     ||||||||||||||||| || || || ||||||||  | |||||||| |||||||||||||| ||  ||  |
------------------------------------gtaagcttcccttttccttctccaagttct--ctcaaacttttcgctttgatc-----ttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

upper sequence: LOC_Os07g12650.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ10812 (Selaginella moellendorffii), 3'ss of exon 2
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
                                        | |    ||| || | |   |  ||  | ||  |   | |    |      |  ||||||||||||||||| || || || ||||||||  | |||||||| |||||||||||||| ||  ||  |
----------------------------------------gtaagcttcccttttcc---ttctccaagttctctcaaacttttcgctttgttcttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88484952|gb|CI422223.1|CI422223
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|6431598|gb|AU081250.1|AU081250
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGANTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88462824|gb|CI519736.1|CI519736
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88206820|gb|CI205136.1|CI205136
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|66914528|gb|CX101376.1|CX101376
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|286843|gb|D15650.1|D15650
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88239555|gb|CI240032.1|CI240032
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|6727454|gb|AU082119.1|AU082119
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88268251|gb|CI378186.1|CI378186
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|33805256|gb|CF328505.1|CF328505
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|4716547|gb|AU057663.1|AU057663
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88526727|gb|CI454809.1|CI454809
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88244300|gb|CI243422.1|CI243422
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88358899|gb|CI619403.1|CI619403
EST:     TTCACCTCGTTAC-GTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CCTTTGCAAGATTGATTCTGAGGGCAAGGC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagC-TTTGCAAGATTGATTCTGAGGGCAAGGC
EST: gi|396941191|gb|HO188400.1|HO188400
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|55432687|gb|CV729364.1|CV729364
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88541748|gb|CI471036.1|CI471036
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGNCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|218504870|gb|FG955942.1|FG955942
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88375932|gb|CI528236.1|CI528236
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88991679|gb|CI019857.1|CI019857
EST:     TTCACCTCGTTACCGTGCCTAGTGCTATAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|86531994|gb|CI172200.1|CI172200
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|55435531|gb|CV730896.1|CV730896
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTTTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88487953|gb|CI425224.1|CI425224
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|10423675|gb|AU108196.1|AU108196
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAG-CTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88438833|gb|CI546315.1|CI546315
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|6934807|gb|AU082344.1|AU082344
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88490307|gb|CI427579.1|CI427579
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|218485304|gb|FG956287.1|FG956287
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATT
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATT
EST: gi|55432689|gb|CV729365.1|CV729365
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTTTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|86510844|gb|CI153477.1|CI153477
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|58597839|gb|CK008367.1|CK008367
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|88479731|gb|CI417002.1|CI417002
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|4715040|gb|AU056157.1|AU056157
EST:     TCACCTCCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TCACCT-CGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|58586800|gb|CF985108.1|CF985108
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|33689961|gb|CF318200.1|CF318200
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|86426700|gb|CI071797.1|CI071797
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|427734|gb|D23869.1|D23869
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTNGGCAGGG                         CTTTGCAAGATTGATTCTGAGGG
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGG
EST: gi|87022556|gb|CI267693.1|CI267693
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: gi|163925955|gb|EG714983.1|EG714983
EST:     TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
                      atttaac  putative branch site (score: 3)
                    tgatttaacaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatctaaattttaatttcattttgttgttgatatcgttctgcatctctcctttctgcatatcttctgatttaacaatatcacaacaaacgttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - tttcatt
- - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa