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...agtgtatttagtttgataataatgctgctctctagctgaacttgtacaaagtatctttctatggttcttacaatgctttattttatttttaccactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAAGGCTCATAAGTCCTTCCGGGACATGGATATCAG
species | Oryza sativa |
transcript | LOC_Os07g09000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58674632|gb|CK063319.1|CK063319
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58592567|gb|CF990875.1|CF990875
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|117233168|gb|CT848021.1|CT848021
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|87005363|gb|CI285585.1|CI285585
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGEST: gi|30228290|gb|CB966181.1|CB966181
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAG
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58683603|gb|CK072290.1|CK072290
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58605016|gb|CK033049.1|CK033049
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|29640028|gb|CB645037.1|CB645037
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58684449|gb|CK073136.1|CK073136
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58668962|gb|CK057648.1|CK057648
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAAEST: gi|29627838|gb|CB632849.1|CB632849
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAA
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|88395653|gb|CI590668.1|CI590668
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: CATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58695857|gb|CK084544.1|CK084544
genomic: CATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|58666737|gb|CK055423.1|CK055423
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATEST: gi|33796125|gb|CF323928.1|CF323928
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
EST: GTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGNTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAEST: gi|29674145|gb|CB670420.1|CB670420
genomic: GTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGG-TGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGA
EST: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAG GATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
genomic: AGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTGGTGAGgtatcggatt ... accactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGAT
acaaagtatctttctatggttcttacaatgctttattttatttttaccactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAAGGCTCATAAGTCCTTCCGGGACATGGATATCAG
ttcttac putative branch site (score: 20)
tttttacc putative PPT
ttcttacaatgcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtatttagtttgataataatgctgctctctagctgaacttgtacaaagtatctttctatggttcttacaatgctttattttatttttaccactatagGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAAGGCTCATAAGTCCTTCCGGGACATGGATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - gctgaac
- - - - - - - - - - - - - - - - - - - - - -gtacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttct