1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttctttaatgtcttcaactcttcataactggtggaaaactagaaatatatcatgttctctttatttctattgggctttcctgagcttcattcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAG
species | Oryza sativa |
transcript | LOC_Os07g08790.1 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GCTGACAGTACTTCCCATAGACACGAAGATGATTCATATTCGGTTACTTC AACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTEST: gi|58684078|gb|CK072765.1|CK072765
genomic: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCgtatcctttc ... attcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGT
EST: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTC AACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTEST: gi|29668090|gb|CB664365.1|CB664365
genomic: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCgtatcctttc ... attcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGT
EST: GCTGACAGTACTTCCCATAGACACGAAGATGATTCATATTCGGTTACTTC AACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTEST: gi|58669084|gb|CK057770.1|CK057770
genomic: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCgtatcctttc ... attcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGT
EST: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTC AACTGTAACTTCAGC
genomic: GCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCgtatcctttc ... attcatccagAACTGTAACTTCAGC
aatatatcatgttctctttatttctattgggctttcctgagcttcattcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAG
ttcctgagc putative branch site
cttcattc CT-rich tract
tctttatttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctttaatgtcttcaactcttcataactggtggaaaactagaaatatatcatgttctctttatttctattgggctttcctgagcttcattcatccagAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - -ctggtgg
- - - - - - - - - - - - - - - - - - aaaactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgagc