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...actatccttagatcattaacaatgtaggatctgtatatcgttatccttatgtcattacaagatatgcttgtttgatctggtttttacataactattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTTACAGAGAGAGAACCACTTGATAGGCCTGATGCAAGATTGATTAAGGAAT
species | Oryza sativa |
transcript | LOC_Os07g08729.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACG AAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTTEST: gi|88356842|gb|CI619328.1|CI619328
genomic: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACGgtaagactaa ... actattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTT
EST: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACG AAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTTEST: gi|88377289|gb|CI600444.1|CI600444
genomic: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACGgtaagactaa ... actattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTT
EST: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACG AAAGAAAAGAAGAATTTACAGGAATTGGGTGGTGTTTATGTTTATAATGTTEST: gi|88364930|gb|CI614548.1|CI614548
genomic: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACGgtaagactaa ... actattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTT
EST: AGATTATCGGTAGATCCTATGATGAACTCGCTATATGTTTCTTTAACACG AAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTT
genomic: AGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACGgtaagactaa ... actattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTT
cttatgtcattacaagatatgcttgtttgatctggtttttacataactattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTTACAGAGAGAGAACCACTTGATAGGCCTGATGCAAGATTGATTAAGGAAT
acataac putative branch site (score: 2)
tttttacataactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatccttagatcattaacaatgtaggatctgtatatcgttatccttatgtcattacaagatatgcttgtttgatctggtttttacataactattgcagAAAGAAAAGAAGAATTTACAGGAATTGGCTGGTGTTTATGTTTATAATGTTACAGAGAGAGAACCACTTGATAGGCCTGATGCAAGATTGATTAAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg