1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttatttatctcacacttccattcatttctttctgtttctggtccttgtcttgttctgatgatattgattttcgtagtaccagaaatataatgttgtgtctaagttttgatgaattcatttagcatcttgaattttcatatacaccttacttttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATGAGCTTCAG ACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAGEST: gi|163926272|gb|EG711848.1|EG711848
genomic: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAGgtttatttat ... ttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
EST: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAG ACTGCAAATGAGGAATCTAAAGCGGGTACAAAAGCAAGGGACATGAAAGEST: gi|58679994|gb|CK068681.1|CK068681
genomic: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAGgtttatttat ... ttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
EST: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAG ACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
genomic: CAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAGgtttatttat ... ttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
tgatgaattcatttagcatcttgaattttcatatacaccttacttttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
accttac putative branch site (score: 52)
ccttacttttgctt CT-rich tract
ttgaattttcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatttatctcacacttccattcatttctttctgtttctggtccttgtcttgttctgatgatattgattttcgtagtaccagaaatataatgttgtgtctaagttttgatgaattcatttagcatcttgaattttcatatacaccttacttttgcttgtagACTGCAAATGAGGAATCTAAAGCGGTTACAAAAGCAAGGGACATGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG