Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG

Basic information

species Oryza sativa
transcript LOC_Os07g05580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G063340_T02 (Zea mays), 3'ss of exon 3
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaac-----aatacatattgtcatttgc---agCTTTGCAAGATTGACTCTGAGG-GCAAGGCAAG----------GAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG---------------------
    ||  |||   |    | |   | || |   ||  | || |  ||| |||  |||||||    |  |  |||||       || |||| ||   |||| |   ||| |  ||   |  ||| ||  | |||     |           ||   |    | || | | |  | |    |  ||                     
---ctgagcacggcctaaggat--atataatctcttggagttgct-ttaaatgtcaagcctttacattttctttttagtcctttaagacatgtttcaattttctagAGCATGCCATTTTCCACTATGCTGTGCAGTATGAACTTGCACCTTGATCATAACAGCCTCCACTTATGCCCCCTTGCAGCTTTGCAAGATTGACTCTGAG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G063340_T03 (Zea mays), 3'ss of exon 3
tcattgtccaccttcctttgttct-gtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaat----acatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
        ||  || |  | |||| | | ||  | |||        | | |     | |   |     | || |  |||||      || |||   |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
-----agacatgtttcaattttctagagcatgccattttccactatgctgtgcagtatgaacttgcaccttgatcataacagcctccacttatgcccccttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G139900_T01 (Zea mays), 3'ss of exon 2
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatt---tgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
   |  ||||  |   | |||  ||  |  |||  |   | |  | |  | |  |    ||| | | | || |  |||||||    | | ||| |   |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
-tttaatccatttagttgtgtgttg-attcttcactagctgtgtattcttttatatgaactt-tggccttgatcgtaacaatctccactttcactccttgcagCTTTGCAAGATTGACTCCGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTTGTCAAG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G32060.1 (Arabidopsis thaliana), 3'ss of exon 3
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
   |       |||||||| || |   |    ||||   |       | || | ||  | ||  ||    |    ||| |||    | | |   |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||
--gtaagttgtcttccttttttatccttgaagctttctctc-----ctctaaggaagactttgatg----gtaactaataatcttcaat-ttggttgcagCTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G15930.2 (Arabidopsis thaliana), 3'ss of exon 3
--------------------tcattgtccac-cttcctttgttctgtgtatttcttttaatttacagttatatgaaaa-gccttcttgtcc-tggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
                    | | |    || |||| | | | |  | | | ||  | | ||||   |  ||    || |  |  || ||  |||       |||   |  |||  || |||||| ||||||||||| |||||||| || || ||||||||||| || ||||| ||  | |||||||||
gtaagtctatgttttcctctttaatactgactcttcatatataccttat-tgtcgctcagtttatcctcctaaatgaatgtttggttatcaatggcaaattgaatctttgatgttgtt-gcagCTCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ26130 (Selaginella moellendorffii), 3'ss of exon 2
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaa--tacatattgtcat-ttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
                                               ||           | ||| |||  ||| |  |||  |      | | || ||||||||||||||||| ||||| || ||||||||  | ||||| || |||||||||||||| ||  ||  |
----------------------------------------------gtaagcttcccttttccttctccaagttctctcaaacttttcgctttgatcttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

upper sequence: LOC_Os07g05580.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ10812 (Selaginella moellendorffii), 3'ss of exon 2
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
                                         ||   ||   |       || |  || ||   |  |||  | |   ||||   ||||||||||||||||| ||||| || ||||||||  | ||||| || |||||||||||||| ||  ||  |
----------------------------------------gtaagcttcccttttccttctccaagttct--ctcaaacttttcgctttgtt-cttgcagCTTTGCAAGATCGACTCCGAAGGCAAGGCTCGAAAGGTCGTCGGCTGCTCCTGCGTGGTGATCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88957717|gb|CI095491.1|CI095491
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88215709|gb|CI215558.1|CI215558
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|163927962|gb|EG714270.1|EG714270
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86424860|gb|CI063621.1|CI063621
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88528027|gb|CI456229.1|CI456229
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88238518|gb|CI238367.1|CI238367
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|38483295|gb|CF967097.1|CF967097
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88366407|gb|CI610702.1|CI610702
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTT
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTT
EST: gi|163926277|gb|EG711853.1|EG711853
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33794898|gb|CF323329.1|CF323329
EST:     AAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTAAGGGCAAGGCAAGAAAGGTTGTGGGCTGCTCC
genomic: AAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86527645|gb|CI167851.1|CI167851
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58586628|gb|CF984936.1|CF984936
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|27920691|gb|CB096499.1|CB096499
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88349278|gb|CI678255.1|CI678255
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGAATCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGG
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGG
EST: gi|88980028|gb|CI026318.1|CI026318
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88986735|gb|CI033878.1|CI033878
EST:     TCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGTCTGCTCC
genomic: TCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88337659|gb|CI632161.1|CI632161
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88484123|gb|CI421394.1|CI421394
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33684771|gb|CF313010.1|CF313010
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCA-GGAAGGGTTGTGGGCTGCTC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGG-TTGTGGGCTGCTC
EST: gi|88586490|gb|CI704191.1|CI704191
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCA
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCA
EST: gi|10794922|gb|AU108888.1|AU108888
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86538397|gb|CI178603.1|CI178603
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33688323|gb|CF316562.1|CF316562
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTG
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTG
EST: gi|88238033|gb|CI237882.1|CI237882
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|8527973|gb|AU092788.1|AU092788
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86419990|gb|CI054791.1|CI054791
EST:     CGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: CGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86413427|gb|CI067832.1|CI067832
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33688324|gb|CF316563.1|CF316563
EST:     GTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTTTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: -TCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|55436659|gb|CV731466.1|CV731466
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33689052|gb|CF317291.1|CF317291
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTG
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTG
EST: gi|11025648|gb|AU162249.1|AU162249
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAAGG                         CTTTGCAAGATTGACTCTGANGGCAA
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAA
EST: gi|88543452|gb|CI473460.1|CI473460
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|8324531|gb|AU091678.1|AU091678
EST:     TTCANCTTGTTACCGTGCCTAGTGCTAAGACTCTTNGCGAGTGGGCAGGG                         CTTTTCAAGATTGACTCTGAGGG
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGG
EST: gi|8527976|gb|AU092791.1|AU092791
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|89167685|gb|CI018488.1|CI018488
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58686766|gb|CK075453.1|CK075453
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88546055|gb|CI475663.1|CI475663
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33688162|gb|CF316401.1|CF316401
EST:     CTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: -TCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58590733|gb|CF989041.1|CF989041
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58589151|gb|CF987459.1|CF987459
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAG
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAG
EST: gi|88244232|gb|CI243354.1|CI243354
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGGCTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88238191|gb|CI238040.1|CI238040
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33691956|gb|CF320195.1|CF320195
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|8528009|gb|AU092824.1|AU092824
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86887814|gb|CI297925.1|CI297925
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAA
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAA
EST: gi|88319357|gb|CI515818.1|CI515818
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|11564864|gb|AU165500.1|AU165500
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88319411|gb|CI515872.1|CI515872
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86545286|gb|CI185492.1|CI185492
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33687600|gb|CF315839.1|CF315839
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|218485100|gb|FG946937.1|FG946937
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33656040|gb|CF278654.1|CF278654
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88238525|gb|CI238374.1|CI238374
EST:     TTCACCTTGTTACCGTGCCTAGTGTTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88995285|gb|CI036860.1|CI036860
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88843505|gb|CI372405.1|CI372405
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58689955|gb|CK078642.1|CK078642
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33689053|gb|CF317292.1|CF317292
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTTTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88214314|gb|CI214163.1|CI214163
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88380231|gb|CI516218.1|CI516218
EST:     TTCACCTTGTTACCGTGCCTATTGCTAAGACTCTTGGCGAGTGGGCAGGN                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|11442873|gb|BF430772.1|BF430772
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88216102|gb|CI215951.1|CI215951
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|87008308|gb|CI301066.1|CI301066
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33688161|gb|CF316400.1|CF316400
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGGTTGTGGGCTGCTC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGG-TTGTGGGCTGCTC
EST: gi|25800831|gb|CA756792.1|CA756792
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88337630|gb|CI632132.1|CI632132
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33824839|gb|CF338229.1|CF338229
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGGTTGTGGGCTGCTC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGG-TTGTGGGCTGCTC
EST: gi|58597428|gb|CK007956.1|CK007956
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88460983|gb|CI515086.1|CI515086
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|38476720|gb|CF960853.1|CF960853
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCGAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|13806873|gb|AU181710.1|AU181710
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33687599|gb|CF315838.1|CF315838
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCA
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCA
EST: gi|33656039|gb|CF278653.1|CF278653
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGGTTGTGGGCTNGCT
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGG-TTGTGGGCT-GCT
EST: gi|88553879|gb|CI484019.1|CI484019
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88516255|gb|CI443909.1|CI443909
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88237360|gb|CI237209.1|CI237209
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|33691957|gb|CF320196.1|CF320196
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88332381|gb|CI656250.1|CI656250
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAA
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAA
EST: gi|88465637|gb|CI522388.1|CI522388
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88546862|gb|CI477115.1|CI477115
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58590187|gb|CF988495.1|CF988495
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88241554|gb|CI241403.1|CI241403
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|14191523|gb|AU183734.1|AU183734
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58681899|gb|CK070586.1|CK070586
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88215162|gb|CI215011.1|CI215011
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|14191849|gb|AU184060.1|AU184060
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88272717|gb|CI386572.1|CI386572
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86419204|gb|CI054005.1|CI054005
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTCTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88207340|gb|CI207189.1|CI207189
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88554837|gb|CI485046.1|CI485046
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|14191850|gb|AU184061.1|AU184061
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|8335087|gb|BE040071.1|BE040071
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88239257|gb|CI240419.1|CI240419
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|88280734|gb|CI401932.1|CI401932
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|58603498|gb|CK014026.1|CK014026
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|218497611|gb|FG955191.1|FG955191
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
EST: gi|86592710|gb|CI268375.1|CI268375
EST:     TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGG                         CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC
genomic: TTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 66 (downstream exon)
Score: 129

CCAACCTGATTATGTCAAGTTGGTTAAGGCTCTGTGTGCTGAGCACAACGTTCACCTTGTTACCGTGCCTAGTGCTAAGACTCTTGGCGAGTGGGCAGGGgtgagttaca ... tcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG
                           ttttaac  putative branch site (score: 129)
                           ttttaacaatacatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcattgtccaccttcctttgttctgtgtatttcttttaatttacagttatatgaaaagccttcttgtcctggttttaacaatacatattgtcatttgcagCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - ccttcct
- - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata