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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattaactctggaaatagtacttggactttatcacagtttttctgagaagagcaacaggattgttaagataattctgacattttacattgtttcctaagGTTGGTGATGAGGACCAGAAATTACCTGAAGGAATCTCTCTTTATTCAATTGCCTCTGAGCACTATGGGAAGCCATCAATTCTTGGTCCATTGATCAAA

Basic information

species Oryza sativa
transcript LOC_Os07g05050.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680607|gb|CB676882.1|CB676882
EST:     TTAGAAAAATCACAAGCAAGTACTTGAAAGATCCAATCATTATTGACCTA                         GTTGGTGATGAGGACCAGAAATTACCTGAAGGAATCTCTCTTTATTCAATT
genomic: TTAGAAAAATCACAAGCAAGTACTTGAAAGATCCAATCATTATTGACCTAgtgagtgcct ... gtttcctaagGTTGGTGATGAGGACCAGAAATTACCTGAAGGAATCTCTCTTTATTCAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaagagcaacaggattgttaagataattctgacattttacattgtttcctaagGTTGGTGATGAGGACCAGAAATTACCTGAAGGAATCTCTCTTTATTCAATTGCCTCTGAGCACTATGGGAAGCCATCAATTCTTGGTCCATTGATCAAA
                            ttctgac  putative branch site (score: 2)
                                           ttgtttcct  putative PPT
               attgttaagataatt  TA-rich tract