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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaactccgaattttgatcagttcatcgatcaatggtggctttggttcagtctgtgataatctcctttttttttttctgttgaagGTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTG

Basic information

species Oryza sativa
transcript LOC_Os07g04520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g04520.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G836990_T01 (Zea mays), 3'ss of exon 2
gtaagttgaactccgaattttgatcagt-tcatcgatcaatggtggctttggttcagtctgtgataatctcctttttttttttctgttgaagGTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTG-----------------------------
|||||   | ||    |||  | |   | |||  |  |  || ||       | || |  ||||| | | || |        | ||    |||  | || |||||||| ||||| |||||||||||||| ||||| || ||||||||| |||||||| |  ||                             
gtaag---agctagcgattcaggttgatctcagagtccgttgatga----actgcaat--gtgatgaacgccatgca-----tatgcatcagGCGACCCACGGATCATCCACCGCGACATCAAGTCGGCCAACATCCTGCTGGACAACGACTTCGAGGCCATGGTCGCCGACTTCGGGCTGGCCAAGCTCAC

upper sequence: LOC_Os07g04520.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 4
------------gtaagttgaactccgaattttgatcagtt--catcgatcaatggtggctttggttcagtctgtgataatctcctttttttttttc-tgttgaagGTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTG
             |        |||    | || | ||  |  |||  | ||  |   ||| ||  || | ||    | ||||  ||   |       || || |||  ||||||||||||||||||| ||||||||||| ||||| |||||| |||||  |||||| ||  |  ||
gtaagttttaacattcaccattctcattttcttaaccaagttgcataaaacagagaaagctctgtctctgactagtgttatctttttggctgagaaaatggtgcagGCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCAAATATTCTCTTGGACTTCAACTTTGATGCTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatggtggctttggttcagtctgtgataatctcctttttttttttctgttgaagGTAATCCTCGGATCATTCACCGTGACATCAAGTCGGCAAACATTCTCCTGGACAACAACTTCGAGCCACTG
                           taatctcctttttttt  CT-rich tract
                                   tttttttttttctgtt  TA-rich tract