1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accaacatggtctagactgaagctcattccaacaatacaatagaaatctgatgaacaaaatgtagtatgatctcttacattaaccaccttttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGA
species | Oryza sativa |
transcript | LOC_Os07g03770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCG ATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGEST: gi|58591417|gb|CF989725.1|CF989725
genomic: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGgtaaatcaac ... ttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTG
EST: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCG ATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGEST: gi|27578312|gb|CB001007.1|CB001007
genomic: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGgtaaatcaac ... ttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTG
EST: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCG ATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTG
genomic: CGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGgtaaatcaac ... ttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTG
atctgatgaacaaaatgtagtatgatctcttacattaaccaccttttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGA
cattaac putative branch site (score: 2)
ccttttgtct putative PPT
ttacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaacatggtctagactgaagctcattccaacaatacaatagaaatctgatgaacaaaatgtagtatgatctcttacattaaccaccttttgtctgcagATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
accaaca
- - - - - - - - ctgaagc
- - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaatg