1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccatctttatcttgggattatgttctgtactaccagaagagatgatttaccatttgcaaatgtccttgtatgtaatgagcactggtctgtaacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAA
species | Oryza sativa |
transcript | LOC_Os07g01930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTACAACCAGCTATTANCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|218490073|gb|FG948574.1|FG948574
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|88461626|gb|CI695464.1|CI695464
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTCTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|66917010|gb|CX103858.1|CX103858
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|58601999|gb|CK012527.1|CK012527
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|24468825|gb|CA305774.1|CA305774
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: AACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCEST: gi|33680135|gb|CF308374.1|CF308374
genomic: AACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
EST: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG AAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
genomic: GTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGgttagtccaa ... aacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGC
tttaccatttgcaaatgtccttgtatgtaatgagcactggtctgtaacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAA
ctgtaac putative branch site (score: 7)
cttttc CT-rich tract
tatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatctttatcttgggattatgttctgtactaccagaagagatgatttaccatttgcaaatgtccttgtatgtaatgagcactggtctgtaacttttcagAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - -accagaa
- - - - - - - - - - - - - - - - - - - - gatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcactgg